Hb_000487_250

Information

Type -
Description -
Location Contig487: 239508-239915
Sequence    

Annotation

kegg
ID rcu:RCOM_1576060
description 60S ribosomal protein L27e, putative
nr
ID XP_002513410.1
description 60S ribosomal protein L27e, putative [Ricinus communis]
swissprot
ID Q05462
description 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1
trembl
ID B9RI41
description 60S ribosomal protein L27 OS=Ricinus communis GN=RCOM_1576060 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l27-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45023: 239339-239978
cDNA
(Sanger)
(ID:Location)		 013_H16.ab1: 239414-239947 , 027_C18.ab1: 239414-239947 , 038_K07.ab1: 239399-239934

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_250 0.0 - - 60S ribosomal protein L27e, putative [Ricinus communis]
2 Hb_005618_140 0.0759710645 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
3 Hb_001818_020 0.0818700861 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
4 Hb_000012_220 0.0843020722 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000970_010 0.0847505147 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
6 Hb_000025_530 0.0847758645 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
7 Hb_007617_020 0.088176521 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000531_020 0.0887924443 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
9 Hb_000380_190 0.0902076166 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
10 Hb_003528_060 0.0902731409 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
11 Hb_002311_350 0.09243368 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
12 Hb_002893_060 0.093856933 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
13 Hb_000917_110 0.0944418344 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
14 Hb_011805_080 0.0948419008 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
15 Hb_019253_030 0.0949657503 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
16 Hb_010261_060 0.0958884602 - - unnamed protein product [Coffea canephora]
17 Hb_001540_010 0.0960549545 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
18 Hb_001477_110 0.0969550314 - - prohibitin, putative [Ricinus communis]
19 Hb_005496_030 0.0984357672 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
20 Hb_003641_020 0.0986816238 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]

Gene co-expression network

sample Hb_000487_250 Hb_000487_250 Hb_005618_140 Hb_005618_140 Hb_000487_250--Hb_005618_140 Hb_001818_020 Hb_001818_020 Hb_000487_250--Hb_001818_020 Hb_000012_220 Hb_000012_220 Hb_000487_250--Hb_000012_220 Hb_000970_010 Hb_000970_010 Hb_000487_250--Hb_000970_010 Hb_000025_530 Hb_000025_530 Hb_000487_250--Hb_000025_530 Hb_007617_020 Hb_007617_020 Hb_000487_250--Hb_007617_020 Hb_002311_350 Hb_002311_350 Hb_005618_140--Hb_002311_350 Hb_002701_240 Hb_002701_240 Hb_005618_140--Hb_002701_240 Hb_001477_110 Hb_001477_110 Hb_005618_140--Hb_001477_110 Hb_000380_190 Hb_000380_190 Hb_005618_140--Hb_000380_190 Hb_089839_020 Hb_089839_020 Hb_005618_140--Hb_089839_020 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_005322_040 Hb_005322_040 Hb_000012_220--Hb_005322_040 Hb_000127_180 Hb_000127_180 Hb_000012_220--Hb_000127_180 Hb_003528_060 Hb_003528_060 Hb_000012_220--Hb_003528_060 Hb_003050_080 Hb_003050_080 Hb_000012_220--Hb_003050_080 Hb_002868_010 Hb_002868_010 Hb_000012_220--Hb_002868_010 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_000970_010--Hb_001584_070 Hb_000970_010--Hb_000545_150 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000703_140 Hb_000703_140 Hb_000025_530--Hb_000703_140 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_011805_080 Hb_011805_080 Hb_007617_020--Hb_011805_080 Hb_001946_210 Hb_001946_210 Hb_007617_020--Hb_001946_210 Hb_007617_020--Hb_002311_350 Hb_002811_230 Hb_002811_230 Hb_007617_020--Hb_002811_230 Hb_169246_010 Hb_169246_010 Hb_007617_020--Hb_169246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
291.484 77.3026 90.6733 103.616 227.901 261.097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
215.119 641.501 205.084 140.208 46.4002

CAGE analysis