Hb_000487_280

Information

Type -
Description -
Location Contig487: 250500-252073
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45027: 250858-258206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_280 0.0 - - -
2 Hb_000011_340 0.1440302651 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
3 Hb_001520_020 0.1459721154 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
4 Hb_116349_010 0.2023396241 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
5 Hb_010422_080 0.2121497515 - - -
6 Hb_008954_010 0.2338825509 - - -
7 Hb_001348_110 0.2519265645 - - PREDICTED: esterase-like [Jatropha curcas]
8 Hb_004907_020 0.2537747538 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
9 Hb_000317_530 0.2576123447 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_000062_410 0.2633324234 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
11 Hb_002983_060 0.2921748102 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
12 Hb_000031_040 0.3027716815 - - centromere protein O [Medicago truncatula]
13 Hb_009954_050 0.3042313377 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
14 Hb_000395_060 0.3086119543 - - -
15 Hb_000804_030 0.3132670603 - - Protein C14orf111, putative [Ricinus communis]
16 Hb_003052_210 0.320713185 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012163_030 0.3252874541 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
18 Hb_002240_080 0.3273943116 - - -
19 Hb_002260_160 0.3372082204 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001959_300 0.3382702642 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000487_280 Hb_000487_280 Hb_000011_340 Hb_000011_340 Hb_000487_280--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_000487_280--Hb_001520_020 Hb_116349_010 Hb_116349_010 Hb_000487_280--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_000487_280--Hb_010422_080 Hb_008954_010 Hb_008954_010 Hb_000487_280--Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_000487_280--Hb_001348_110 Hb_000011_340--Hb_001520_020 Hb_000011_340--Hb_001348_110 Hb_000011_340--Hb_008954_010 Hb_000804_030 Hb_000804_030 Hb_000011_340--Hb_000804_030 Hb_000011_340--Hb_116349_010 Hb_001520_020--Hb_001348_110 Hb_001520_020--Hb_008954_010 Hb_001520_020--Hb_000804_030 Hb_009954_050 Hb_009954_050 Hb_001520_020--Hb_009954_050 Hb_002983_060 Hb_002983_060 Hb_116349_010--Hb_002983_060 Hb_116349_010--Hb_010422_080 Hb_116349_010--Hb_001520_020 Hb_001959_300 Hb_001959_300 Hb_116349_010--Hb_001959_300 Hb_000317_530 Hb_000317_530 Hb_010422_080--Hb_000317_530 Hb_010422_080--Hb_002983_060 Hb_010422_080--Hb_000011_340 Hb_000062_410 Hb_000062_410 Hb_010422_080--Hb_000062_410 Hb_008954_010--Hb_001348_110 Hb_008954_010--Hb_000804_030 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110 Hb_001348_110--Hb_000804_030 Hb_075060_030 Hb_075060_030 Hb_001348_110--Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_001348_110--Hb_000270_800
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588564 0.466465 0 0.437332 0

CAGE analysis