Hb_000487_290

Information

Type -
Description -
Location Contig487: 252312-258242
Sequence    

Annotation

kegg
ID rcu:RCOM_1576190
description ribonucleic acid binding protein S1, putative
nr
ID XP_002513413.1
description ribonucleic acid binding protein S1, putative [Ricinus communis]
swissprot
ID Q9SEE9
description Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana GN=SR45 PE=1 SV=1
trembl
ID B9RI44
description Ribonucleic acid binding protein S1, putative OS=Ricinus communis GN=RCOM_1576190 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor sr45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45027: 250858-258206
cDNA
(Sanger)
(ID:Location)		 003_H14.ab1: 254898-258206 , 010_F21.ab1: 254896-258154 , 051_G11.ab1: 255075-258206

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_290 0.0 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
2 Hb_005188_050 0.0445618337 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
3 Hb_123352_020 0.0516266341 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
4 Hb_000827_070 0.0628080812 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_005731_030 0.0679313028 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
6 Hb_000025_360 0.0698069331 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
7 Hb_004724_060 0.0706647405 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
8 Hb_001226_030 0.0730326851 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
9 Hb_000046_010 0.0738589002 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
10 Hb_120327_010 0.0742612944 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_001797_050 0.0743099251 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
12 Hb_002603_120 0.07442506 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
13 Hb_007254_070 0.0749276533 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_004602_040 0.0757646433 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
15 Hb_000803_190 0.075823087 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_007163_090 0.0767062951 - - PREDICTED: protein spt2-like [Jatropha curcas]
17 Hb_000629_010 0.0772092922 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
18 Hb_005532_050 0.0775391493 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_001143_160 0.0778648087 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
20 Hb_001718_090 0.0788877192 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_290 Hb_000487_290 Hb_005188_050 Hb_005188_050 Hb_000487_290--Hb_005188_050 Hb_123352_020 Hb_123352_020 Hb_000487_290--Hb_123352_020 Hb_000827_070 Hb_000827_070 Hb_000487_290--Hb_000827_070 Hb_005731_030 Hb_005731_030 Hb_000487_290--Hb_005731_030 Hb_000025_360 Hb_000025_360 Hb_000487_290--Hb_000025_360 Hb_004724_060 Hb_004724_060 Hb_000487_290--Hb_004724_060 Hb_005188_050--Hb_000827_070 Hb_002603_120 Hb_002603_120 Hb_005188_050--Hb_002603_120 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_045793_010 Hb_045793_010 Hb_005188_050--Hb_045793_010 Hb_005188_050--Hb_000025_360 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_000827_070--Hb_045793_010 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_010222_050 Hb_010222_050 Hb_005731_030--Hb_010222_050 Hb_003029_110 Hb_003029_110 Hb_005731_030--Hb_003029_110 Hb_000820_170 Hb_000820_170 Hb_005731_030--Hb_000820_170 Hb_002518_280 Hb_002518_280 Hb_005731_030--Hb_002518_280 Hb_010618_010 Hb_010618_010 Hb_005731_030--Hb_010618_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_004724_060--Hb_007163_090 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_004724_060--Hb_123352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3888 62.3676 27.9557 24.2438 71.2652 76.5351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3413 46.254 54.3851 48.8172 25.4193

CAGE analysis