Hb_000487_380

Information

Type -
Description -
Location Contig487: 300609-307839
Sequence    

Annotation

kegg
ID rcu:RCOM_1576440
description hypothetical protein
nr
ID XP_012087418.1
description PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
swissprot
ID B5DF93
description Protein PAT1 homolog 1 OS=Rattus norvegicus GN=Patl1 PE=2 SV=1
trembl
ID A0A067JMJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22657 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45036: 301666-307864 , PASA_asmbl_45037: 303460-304303 , PASA_asmbl_45038: 301962-303456 , PASA_asmbl_45039: 301768-301959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_380 0.0 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
2 Hb_002046_020 0.0705529265 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
3 Hb_004586_290 0.0708779125 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
4 Hb_011242_060 0.0731589 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
5 Hb_003078_020 0.0760837802 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
6 Hb_005568_040 0.076755322 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
7 Hb_011287_050 0.0820054527 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
8 Hb_000260_070 0.083521719 - - kinase, putative [Ricinus communis]
9 Hb_000236_410 0.0861084922 - - Paramyosin, putative [Ricinus communis]
10 Hb_004785_030 0.0864495822 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
11 Hb_000094_310 0.0868504906 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
12 Hb_006573_210 0.0872526164 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
13 Hb_032808_030 0.0875498032 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_003729_030 0.087590609 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
15 Hb_008103_020 0.0876402657 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
16 Hb_000402_230 0.0879964999 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
17 Hb_000025_280 0.0880057013 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
18 Hb_001674_030 0.0880240617 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
19 Hb_000059_020 0.0887796248 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
20 Hb_004645_070 0.0890028718 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_380 Hb_000487_380 Hb_002046_020 Hb_002046_020 Hb_000487_380--Hb_002046_020 Hb_004586_290 Hb_004586_290 Hb_000487_380--Hb_004586_290 Hb_011242_060 Hb_011242_060 Hb_000487_380--Hb_011242_060 Hb_003078_020 Hb_003078_020 Hb_000487_380--Hb_003078_020 Hb_005568_040 Hb_005568_040 Hb_000487_380--Hb_005568_040 Hb_011287_050 Hb_011287_050 Hb_000487_380--Hb_011287_050 Hb_000236_410 Hb_000236_410 Hb_002046_020--Hb_000236_410 Hb_000941_130 Hb_000941_130 Hb_002046_020--Hb_000941_130 Hb_000025_280 Hb_000025_280 Hb_002046_020--Hb_000025_280 Hb_003071_020 Hb_003071_020 Hb_002046_020--Hb_003071_020 Hb_002046_020--Hb_003078_020 Hb_004586_290--Hb_005568_040 Hb_003120_080 Hb_003120_080 Hb_004586_290--Hb_003120_080 Hb_001628_070 Hb_001628_070 Hb_004586_290--Hb_001628_070 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_000402_230 Hb_000402_230 Hb_004586_290--Hb_000402_230 Hb_004586_290--Hb_000025_280 Hb_000069_470 Hb_000069_470 Hb_011242_060--Hb_000069_470 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_000265_090 Hb_000265_090 Hb_011242_060--Hb_000265_090 Hb_003729_030 Hb_003729_030 Hb_011242_060--Hb_003729_030 Hb_000836_020 Hb_000836_020 Hb_011242_060--Hb_000836_020 Hb_000321_150 Hb_000321_150 Hb_011242_060--Hb_000321_150 Hb_000094_310 Hb_000094_310 Hb_003078_020--Hb_000094_310 Hb_008937_010 Hb_008937_010 Hb_003078_020--Hb_008937_010 Hb_003078_020--Hb_000941_130 Hb_004410_120 Hb_004410_120 Hb_003078_020--Hb_004410_120 Hb_001489_100 Hb_001489_100 Hb_003078_020--Hb_001489_100 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_001105_160 Hb_001105_160 Hb_011287_050--Hb_001105_160 Hb_011287_050--Hb_003912_070 Hb_011287_050--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_011287_050--Hb_012092_060 Hb_061878_010 Hb_061878_010 Hb_011287_050--Hb_061878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.9726 68.7773 18.2149 44.6038 25.5836 34.2123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8842 13.7795 26.5219 35.6479 28.1755

CAGE analysis