Hb_000487_390

Information

Type -
Description -
Location Contig487: 312587-314098
Sequence    

Annotation

kegg
ID rcu:RCOM_1576460
description hypothetical protein
nr
ID XP_012087421.1
description PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
swissprot
ID Q9LXC5
description Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3 SV=1
trembl
ID A0A067JQK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_390 0.0 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
2 Hb_001263_020 0.0048525226 - - -
3 Hb_012656_010 0.0060595031 - - -
4 Hb_003812_010 0.0157738129 - - -
5 Hb_001754_220 0.0686443919 - - -
6 Hb_000866_160 0.1331848879 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
7 Hb_019654_160 0.1337299505 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_031089_060 0.1347593158 - - -
9 Hb_012799_090 0.1351662728 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
10 Hb_001798_040 0.269477385 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
11 Hb_000982_030 0.3350108069 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005524_010 0.3529954102 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_000326_020 0.3575300456 - - -
14 Hb_000330_180 0.3633010331 - - -
15 Hb_001541_240 0.3645035538 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007189_020 0.3858690885 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_000917_250 0.4076771071 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
18 Hb_000853_380 0.4120127016 - - conserved hypothetical protein [Ricinus communis]
19 Hb_156635_050 0.4158487279 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
20 Hb_002498_090 0.4165558141 - - -

Gene co-expression network

sample Hb_000487_390 Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_000487_390--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_000487_390--Hb_012656_010 Hb_003812_010 Hb_003812_010 Hb_000487_390--Hb_003812_010 Hb_001754_220 Hb_001754_220 Hb_000487_390--Hb_001754_220 Hb_000866_160 Hb_000866_160 Hb_000487_390--Hb_000866_160 Hb_019654_160 Hb_019654_160 Hb_000487_390--Hb_019654_160 Hb_001263_020--Hb_012656_010 Hb_001263_020--Hb_003812_010 Hb_001263_020--Hb_001754_220 Hb_001263_020--Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_001263_020--Hb_012799_090 Hb_012656_010--Hb_003812_010 Hb_012656_010--Hb_001754_220 Hb_012656_010--Hb_019654_160 Hb_012656_010--Hb_012799_090 Hb_003812_010--Hb_001754_220 Hb_003812_010--Hb_019654_160 Hb_003812_010--Hb_012799_090 Hb_001754_220--Hb_019654_160 Hb_001754_220--Hb_012799_090 Hb_031089_060 Hb_031089_060 Hb_000866_160--Hb_031089_060 Hb_000866_160--Hb_001263_020 Hb_000866_160--Hb_012656_010 Hb_000866_160--Hb_003812_010 Hb_000866_160--Hb_001754_220 Hb_019654_160--Hb_012799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0136106 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0243446 0 0 0

CAGE analysis