Hb_000487_420

Information

Type transcription factor
Description TF Family: TRAF
Location Contig487: 326645-336033
Sequence    

Annotation

kegg
ID rcu:RCOM_1576500
description hypothetical protein
nr
ID XP_012087427.1
description PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
swissprot
ID P93820
description BTB/POZ domain-containing protein At1g04390 OS=Arabidopsis thaliana GN=At1g04390 PE=2 SV=3
trembl
ID B9RI55
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45041: 334660-335049 , PASA_asmbl_45042: 334952-335494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_420 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
2 Hb_000640_310 0.0692861144 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
3 Hb_001799_050 0.0708310812 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
4 Hb_027760_080 0.0733028099 - - cytochrome P450, putative [Ricinus communis]
5 Hb_002045_150 0.0752223836 - - histone acetyltransferase gcn5, putative [Ricinus communis]
6 Hb_140049_030 0.0759815249 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
7 Hb_000160_350 0.0790494538 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
8 Hb_000771_180 0.0795634777 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_000334_270 0.0819317819 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_002783_310 0.0844347245 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
11 Hb_002374_280 0.0847656943 - - -
12 Hb_000152_340 0.0858238015 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
13 Hb_008887_020 0.0869116227 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
14 Hb_000181_120 0.0878429466 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
15 Hb_075745_020 0.0887990477 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
16 Hb_001718_090 0.0896632328 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
17 Hb_031527_020 0.0922687227 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
18 Hb_050847_020 0.0935441642 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_002157_260 0.0943103124 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
20 Hb_000032_010 0.094406412 - - crooked neck protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000487_420 Hb_000487_420 Hb_000640_310 Hb_000640_310 Hb_000487_420--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000487_420--Hb_001799_050 Hb_027760_080 Hb_027760_080 Hb_000487_420--Hb_027760_080 Hb_002045_150 Hb_002045_150 Hb_000487_420--Hb_002045_150 Hb_140049_030 Hb_140049_030 Hb_000487_420--Hb_140049_030 Hb_000160_350 Hb_000160_350 Hb_000487_420--Hb_000160_350 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_001799_050--Hb_000556_170 Hb_001799_050--Hb_000160_350 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250 Hb_027760_080--Hb_000640_310 Hb_027760_080--Hb_001799_050 Hb_008887_020 Hb_008887_020 Hb_027760_080--Hb_008887_020 Hb_000092_020 Hb_000092_020 Hb_027760_080--Hb_000092_020 Hb_022256_060 Hb_022256_060 Hb_027760_080--Hb_022256_060 Hb_027760_080--Hb_001143_250 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_140049_030--Hb_000771_180 Hb_140049_030--Hb_000300_360 Hb_140049_030--Hb_050847_020 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000160_350--Hb_000771_180 Hb_000160_350--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.00645 6.34425 3.57614 1.63212 6.46991 4.30545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92451 3.78591 1.6996 3.39991 2.81207

CAGE analysis