Hb_000488_010

Information

Type -
Description -
Location Contig488: 2395-7032
Sequence    

Annotation

kegg
ID mtr:MTR_4g091590
description 18.2 kDa class I heat shock protein
nr
ID NP_001295721.1
description 18.1 kDa class I heat shock protein [Jatropha curcas]
swissprot
ID P05478
description 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1
trembl
ID D6BR57
description Heat-shock protein OS=Jatropha curcas GN=JCGZ_02894 PE=2 SV=1
Gene Ontology
ID GO:0005737
description kda class i heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45082: 2341-2682 , PASA_asmbl_45083: 6485-7416
cDNA
(Sanger)
(ID:Location)		 002_I11.ab1: 6485-7082 , 026_B18.ab1: 6495-7145 , 033_J12.ab1: 6486-7155

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000488_010 0.0 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
2 Hb_000483_180 0.15112908 - - -
3 Hb_026198_040 0.1609758257 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
4 Hb_029223_050 0.1675947007 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
5 Hb_030827_060 0.1692989789 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
6 Hb_000538_010 0.1731067513 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
7 Hb_000422_110 0.177171171 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
8 Hb_000920_250 0.1794292676 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
9 Hb_001307_010 0.1861412764 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
10 Hb_000544_060 0.1888599084 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_148392_010 0.1889322377 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000080_170 0.1894453111 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_001902_060 0.1898139153 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
14 Hb_144824_010 0.1917462481 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
15 Hb_000340_110 0.1918779163 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
16 Hb_001999_250 0.1925342041 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
17 Hb_000181_360 0.1934162702 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
18 Hb_023001_070 0.1950836694 - - PREDICTED: dnaJ protein ERDJ3A-like [Eucalyptus grandis]
19 Hb_003858_090 0.1950873991 - - Filamin-A-interacting protein, putative [Ricinus communis]
20 Hb_013394_060 0.195981635 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000488_010 Hb_000488_010 Hb_000483_180 Hb_000483_180 Hb_000488_010--Hb_000483_180 Hb_026198_040 Hb_026198_040 Hb_000488_010--Hb_026198_040 Hb_029223_050 Hb_029223_050 Hb_000488_010--Hb_029223_050 Hb_030827_060 Hb_030827_060 Hb_000488_010--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_000488_010--Hb_000538_010 Hb_000422_110 Hb_000422_110 Hb_000488_010--Hb_000422_110 Hb_119886_040 Hb_119886_040 Hb_000483_180--Hb_119886_040 Hb_009558_040 Hb_009558_040 Hb_000483_180--Hb_009558_040 Hb_002311_230 Hb_002311_230 Hb_000483_180--Hb_002311_230 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360 Hb_026198_040--Hb_029223_050 Hb_000340_110 Hb_000340_110 Hb_026198_040--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_026198_040--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_026198_040--Hb_000544_060 Hb_026198_040--Hb_030827_060 Hb_000832_320 Hb_000832_320 Hb_026198_040--Hb_000832_320 Hb_029223_050--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_029223_050--Hb_001511_110 Hb_029223_050--Hb_001141_370 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_030827_060--Hb_000422_110 Hb_030827_060--Hb_104265_030 Hb_018133_030 Hb_018133_030 Hb_030827_060--Hb_018133_030 Hb_004449_050 Hb_004449_050 Hb_030827_060--Hb_004449_050 Hb_002999_060 Hb_002999_060 Hb_030827_060--Hb_002999_060 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_013394_060 Hb_013394_060 Hb_000538_010--Hb_013394_060 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130 Hb_013749_020 Hb_013749_020 Hb_000422_110--Hb_013749_020 Hb_007813_030 Hb_007813_030 Hb_000422_110--Hb_007813_030 Hb_002073_280 Hb_002073_280 Hb_000422_110--Hb_002073_280 Hb_000574_510 Hb_000574_510 Hb_000422_110--Hb_000574_510 Hb_000422_110--Hb_000544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
399.761 1630.01 293.812 92.1275 1374.23 464.961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
193.869 185.022 142.6 164.615 377.593

CAGE analysis