Hb_000489_050

Information

Type -
Description -
Location Contig489: 61267-62516
Sequence    

Annotation

kegg
ID atr:s00111p00088830
description AMTR_s00111p00088830; hypothetical protein
nr
ID XP_012084624.1
description PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
swissprot
ID Q0WRJ7
description Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1
trembl
ID A0A067L9W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15081 PE=4 SV=1
Gene Ontology
ID GO:0044237
description peptidyl-prolyl cis-trans isomerase fkbp20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000489_050 0.0 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
2 Hb_003667_030 0.002091652 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
3 Hb_000334_100 0.0035106303 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
4 Hb_000008_100 0.0070846223 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
5 Hb_002391_280 0.0081664972 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
6 Hb_002817_020 0.0085359943 - - -
7 Hb_002151_140 0.0088360714 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
8 Hb_000784_050 0.0105665089 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
9 Hb_000280_070 0.0110911719 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
10 Hb_000221_010 0.0127393469 - - polyprotein [Oryza australiensis]
11 Hb_000307_080 0.0130528707 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000173_070 0.014044594 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
13 Hb_003995_040 0.0147249972 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
14 Hb_000417_240 0.0148651084 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
15 Hb_001019_110 0.0156926498 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
16 Hb_000381_060 0.0161256451 - - -
17 Hb_001132_020 0.0189525334 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_007975_070 0.0198097825 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
19 Hb_156853_010 0.0209663705 - - PREDICTED: vinorine synthase-like [Populus euphratica]
20 Hb_105767_030 0.0212137014 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000489_050 Hb_000489_050 Hb_003667_030 Hb_003667_030 Hb_000489_050--Hb_003667_030 Hb_000334_100 Hb_000334_100 Hb_000489_050--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000489_050--Hb_000008_100 Hb_002391_280 Hb_002391_280 Hb_000489_050--Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_000489_050--Hb_002817_020 Hb_002151_140 Hb_002151_140 Hb_000489_050--Hb_002151_140 Hb_003667_030--Hb_000334_100 Hb_003667_030--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_003667_030--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_003667_030--Hb_000280_070 Hb_003667_030--Hb_000008_100 Hb_000334_100--Hb_000008_100 Hb_000334_100--Hb_002391_280 Hb_000334_100--Hb_002817_020 Hb_000221_010 Hb_000221_010 Hb_000334_100--Hb_000221_010 Hb_000008_100--Hb_002391_280 Hb_000008_100--Hb_002817_020 Hb_000008_100--Hb_000221_010 Hb_001019_110 Hb_001019_110 Hb_000008_100--Hb_001019_110 Hb_002391_280--Hb_002817_020 Hb_002391_280--Hb_000221_010 Hb_002391_280--Hb_001019_110 Hb_000381_060 Hb_000381_060 Hb_002391_280--Hb_000381_060 Hb_002817_020--Hb_000221_010 Hb_002817_020--Hb_001019_110 Hb_002817_020--Hb_000381_060 Hb_002151_140--Hb_000784_050 Hb_002151_140--Hb_000280_070 Hb_000307_080 Hb_000307_080 Hb_002151_140--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_002151_140--Hb_000173_070 Hb_003995_040 Hb_003995_040 Hb_002151_140--Hb_003995_040 Hb_000417_240 Hb_000417_240 Hb_002151_140--Hb_000417_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.56053 0.462116 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis