Hb_000490_030

Information

Type -
Description -
Location Contig490: 29844-36199
Sequence    

Annotation

kegg
ID rcu:RCOM_0811900
description DNA-directed RNA polymerase II subunit, putative
nr
ID XP_002518700.1
description DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
swissprot
ID Q39211
description DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1
trembl
ID B9RYB6
description DNA-directed RNA polymerase II subunit, putative OS=Ricinus communis GN=RCOM_0811900 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases iv and v subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45282: 29897-36373
cDNA
(Sanger)
(ID:Location)		 018_F24.ab1: 29921-35627 , 019_B05.ab1: 29921-30706

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000490_030 0.0 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
2 Hb_001936_050 0.0549904277 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
3 Hb_029281_010 0.0643268719 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
4 Hb_000358_080 0.0652043634 - - Ribonuclease 3 [Gossypium arboreum]
5 Hb_006091_030 0.0680162413 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
6 Hb_000340_510 0.0758653035 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
7 Hb_002874_070 0.079227084 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
8 Hb_000078_130 0.0816428439 - - -
9 Hb_002818_040 0.0826531162 - - tRNA synthetase-related family protein [Populus trichocarpa]
10 Hb_003581_140 0.0829647162 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
11 Hb_002169_010 0.0850281601 - - PREDICTED: la-related protein 6B [Jatropha curcas]
12 Hb_011496_010 0.0863319611 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
13 Hb_000462_150 0.0893659713 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
14 Hb_185467_020 0.0915335953 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_007943_080 0.0921247343 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
16 Hb_000608_120 0.0922141117 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
17 Hb_005730_030 0.0929274221 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
18 Hb_000172_400 0.0950831999 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_000413_130 0.0951557435 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
20 Hb_004055_040 0.0957885739 - - Phospholipid-transporting ATPase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000490_030 Hb_000490_030 Hb_001936_050 Hb_001936_050 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000358_080 Hb_000358_080 Hb_000490_030--Hb_000358_080 Hb_006091_030 Hb_006091_030 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070 Hb_001936_050--Hb_002874_070 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_001936_050--Hb_000340_510 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_029281_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_001584_110 Hb_001584_110 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_022256_040 Hb_022256_040 Hb_002874_070--Hb_022256_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
196.36 73.9967 21.4395 28.6967 197.413 212.896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.469 84.5247 170.455 63.2759 17.6867

CAGE analysis