Hb_000490_040

Information

Type -
Description -
Location Contig490: 48821-50752
Sequence    

Annotation

kegg
ID rcu:RCOM_0811920
description cyclin d, putative
nr
ID XP_012065600.1
description PREDICTED: cyclin-D3-1 [Jatropha curcas]
swissprot
ID P42753
description Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
trembl
ID A0A067LIA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22124 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d3-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45284: 48895-50694
cDNA
(Sanger)
(ID:Location)		 014_I08.ab1: 49768-50694 , 051_J10.ab1: 49878-50694 , 051_P13.ab1: 49894-50694

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000490_040 0.0 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
2 Hb_006711_040 0.0975834501 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
3 Hb_000343_220 0.1049804388 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
4 Hb_009535_010 0.1114589276 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
5 Hb_002276_250 0.1197281091 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
6 Hb_004357_030 0.1212387791 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_000535_040 0.1230131647 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
8 Hb_003754_020 0.1294976421 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_008143_060 0.131613046 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
10 Hb_001252_050 0.136202432 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
11 Hb_002559_010 0.1387275247 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
12 Hb_007382_080 0.1388652353 - - glutaredoxin, grx, putative [Ricinus communis]
13 Hb_000272_010 0.1399164176 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
14 Hb_003189_010 0.1413520258 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
15 Hb_001473_060 0.1419566663 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
16 Hb_004846_080 0.1486632448 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
17 Hb_000668_050 0.1499983289 - - phosphoglycerate mutase, putative [Ricinus communis]
18 Hb_000979_070 0.1507485091 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
19 Hb_027556_060 0.1507834231 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
20 Hb_000094_230 0.1547035346 - - hypothetical protein JCGZ_04416 [Jatropha curcas]

Gene co-expression network

sample Hb_000490_040 Hb_000490_040 Hb_006711_040 Hb_006711_040 Hb_000490_040--Hb_006711_040 Hb_000343_220 Hb_000343_220 Hb_000490_040--Hb_000343_220 Hb_009535_010 Hb_009535_010 Hb_000490_040--Hb_009535_010 Hb_002276_250 Hb_002276_250 Hb_000490_040--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_000490_040--Hb_004357_030 Hb_000535_040 Hb_000535_040 Hb_000490_040--Hb_000535_040 Hb_006711_040--Hb_000343_220 Hb_008143_060 Hb_008143_060 Hb_006711_040--Hb_008143_060 Hb_001252_050 Hb_001252_050 Hb_006711_040--Hb_001252_050 Hb_001832_140 Hb_001832_140 Hb_006711_040--Hb_001832_140 Hb_000272_010 Hb_000272_010 Hb_006711_040--Hb_000272_010 Hb_000343_220--Hb_001252_050 Hb_002081_190 Hb_002081_190 Hb_000343_220--Hb_002081_190 Hb_000343_220--Hb_000272_010 Hb_000128_050 Hb_000128_050 Hb_000343_220--Hb_000128_050 Hb_009535_010--Hb_000272_010 Hb_009535_010--Hb_006711_040 Hb_009535_010--Hb_000343_220 Hb_009535_010--Hb_000535_040 Hb_009535_010--Hb_001252_050 Hb_003754_020 Hb_003754_020 Hb_002276_250--Hb_003754_020 Hb_000431_100 Hb_000431_100 Hb_002276_250--Hb_000431_100 Hb_004055_090 Hb_004055_090 Hb_002276_250--Hb_004055_090 Hb_000805_270 Hb_000805_270 Hb_002276_250--Hb_000805_270 Hb_000046_240 Hb_000046_240 Hb_002276_250--Hb_000046_240 Hb_004357_030--Hb_000805_270 Hb_000339_050 Hb_000339_050 Hb_004357_030--Hb_000339_050 Hb_004357_030--Hb_003754_020 Hb_000506_050 Hb_000506_050 Hb_004357_030--Hb_000506_050 Hb_004357_030--Hb_002276_250 Hb_000094_230 Hb_000094_230 Hb_000535_040--Hb_000094_230 Hb_000535_040--Hb_000272_010 Hb_008143_050 Hb_008143_050 Hb_000535_040--Hb_008143_050 Hb_001782_100 Hb_001782_100 Hb_000535_040--Hb_001782_100 Hb_001263_030 Hb_001263_030 Hb_000535_040--Hb_001263_030 Hb_000979_070 Hb_000979_070 Hb_000535_040--Hb_000979_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153518 0.25435 11.4928 12.7874 0.0239599 0.0380698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0431516 9.12161 1.87432

CAGE analysis