Hb_000491_090

Information

Type -
Description -
Location Contig491: 163076-165285
Sequence    

Annotation

kegg
ID bvg:104892462
description F-box protein SKIP31
nr
ID KJB51499.1
description hypothetical protein B456_008G219400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2T4U1
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G219400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45301: 139030-165254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000491_090 0.0 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
2 Hb_015057_010 0.1068006272 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
3 Hb_004448_020 0.1137422883 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
4 Hb_000380_010 0.1142820269 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
5 Hb_001221_510 0.1152245514 - - Protein HVA22, putative [Ricinus communis]
6 Hb_001173_040 0.1259999384 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_100777_010 0.1295683799 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
8 Hb_002810_030 0.131617345 - - hypothetical protein VITISV_015705 [Vitis vinifera]
9 Hb_011671_220 0.1322621834 - - conserved hypothetical protein [Ricinus communis]
10 Hb_092100_020 0.1362856471 - - strictosidine synthase, putative [Ricinus communis]
11 Hb_002154_050 0.1378430431 - - RNA binding protein, putative [Ricinus communis]
12 Hb_002259_150 0.1394997272 - - BnaC04g40780D [Brassica napus]
13 Hb_006602_010 0.1413915106 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
14 Hb_116264_010 0.1421054784 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
15 Hb_004453_150 0.1422599525 - - BnaC02g13240D [Brassica napus]
16 Hb_004116_040 0.1423375913 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
17 Hb_007317_060 0.1434115457 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
18 Hb_001235_070 0.1436524689 - - conserved hypothetical protein [Ricinus communis]
19 Hb_023226_090 0.1437073577 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
20 Hb_001629_100 0.1442750145 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_000491_090 Hb_000491_090 Hb_015057_010 Hb_015057_010 Hb_000491_090--Hb_015057_010 Hb_004448_020 Hb_004448_020 Hb_000491_090--Hb_004448_020 Hb_000380_010 Hb_000380_010 Hb_000491_090--Hb_000380_010 Hb_001221_510 Hb_001221_510 Hb_000491_090--Hb_001221_510 Hb_001173_040 Hb_001173_040 Hb_000491_090--Hb_001173_040 Hb_100777_010 Hb_100777_010 Hb_000491_090--Hb_100777_010 Hb_004453_150 Hb_004453_150 Hb_015057_010--Hb_004453_150 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_015057_010--Hb_000380_010 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020 Hb_011671_220 Hb_011671_220 Hb_004448_020--Hb_011671_220 Hb_004448_020--Hb_000963_190 Hb_004448_020--Hb_015057_010 Hb_005656_050 Hb_005656_050 Hb_004448_020--Hb_005656_050 Hb_004448_020--Hb_009558_020 Hb_007317_060 Hb_007317_060 Hb_000380_010--Hb_007317_060 Hb_008173_120 Hb_008173_120 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_007012_020 Hb_007012_020 Hb_000380_010--Hb_007012_020 Hb_116264_010 Hb_116264_010 Hb_001221_510--Hb_116264_010 Hb_111648_010 Hb_111648_010 Hb_001221_510--Hb_111648_010 Hb_001396_220 Hb_001396_220 Hb_001221_510--Hb_001396_220 Hb_001221_510--Hb_004448_020 Hb_000048_050 Hb_000048_050 Hb_001221_510--Hb_000048_050 Hb_002539_090 Hb_002539_090 Hb_001173_040--Hb_002539_090 Hb_001258_080 Hb_001258_080 Hb_001173_040--Hb_001258_080 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_000172_030 Hb_000172_030 Hb_001173_040--Hb_000172_030 Hb_000751_130 Hb_000751_130 Hb_001173_040--Hb_000751_130 Hb_001008_010 Hb_001008_010 Hb_001173_040--Hb_001008_010 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_100777_010--Hb_001235_070 Hb_000362_210 Hb_000362_210 Hb_100777_010--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.3684 14.6721 6.29924 41.1688 76.3807 309.337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
256.901 146.576 205.106 71.1818 32.1467

CAGE analysis