Hb_000494_010

Information

Type transcription factor
Description TF Family: HB
Location Contig494: 16730-18532
Sequence    

Annotation

kegg
ID pop:POPTR_0014s04460g
description hypothetical protein
nr
ID XP_006375109.1
description hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
swissprot
ID P46602
description Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2
trembl
ID U5FSF5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s04460g PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45393: 16680-18227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_010 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
2 Hb_005116_130 0.0759378049 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
3 Hb_000110_240 0.0818360418 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
4 Hb_046590_010 0.0949382191 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
5 Hb_001579_190 0.1222189995 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003077_010 0.1228485795 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000500_330 0.1250680888 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
8 Hb_000152_650 0.1252565463 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_001655_080 0.1285473056 - - Purple acid phosphatase precursor, putative [Ricinus communis]
10 Hb_001442_050 0.1317230775 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
11 Hb_104014_010 0.1338087673 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
12 Hb_000188_070 0.1409546196 - - calcineurin-like phosphoesterase [Manihot esculenta]
13 Hb_008643_220 0.1418204813 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
14 Hb_007574_020 0.1439988606 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
15 Hb_000358_160 0.1456470088 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
16 Hb_000264_160 0.145998092 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
17 Hb_002121_030 0.146190783 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
18 Hb_002499_050 0.148006731 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_002918_170 0.1484796785 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
20 Hb_002843_130 0.1486378881 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000494_010 Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_000494_010--Hb_005116_130 Hb_000110_240 Hb_000110_240 Hb_000494_010--Hb_000110_240 Hb_046590_010 Hb_046590_010 Hb_000494_010--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000494_010--Hb_001579_190 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_000500_330 Hb_000500_330 Hb_000494_010--Hb_000500_330 Hb_005116_130--Hb_046590_010 Hb_005116_130--Hb_000110_240 Hb_000188_070 Hb_000188_070 Hb_005116_130--Hb_000188_070 Hb_001442_050 Hb_001442_050 Hb_005116_130--Hb_001442_050 Hb_001655_080 Hb_001655_080 Hb_005116_130--Hb_001655_080 Hb_000110_240--Hb_000500_330 Hb_000110_240--Hb_046590_010 Hb_000110_240--Hb_001579_190 Hb_000110_240--Hb_001442_050 Hb_046590_010--Hb_001655_080 Hb_046590_010--Hb_000188_070 Hb_104014_010 Hb_104014_010 Hb_046590_010--Hb_104014_010 Hb_008643_220 Hb_008643_220 Hb_001579_190--Hb_008643_220 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_010683_070 Hb_010683_070 Hb_001579_190--Hb_010683_070 Hb_001606_040 Hb_001606_040 Hb_003077_010--Hb_001606_040 Hb_001123_340 Hb_001123_340 Hb_003077_010--Hb_001123_340 Hb_003077_010--Hb_104014_010 Hb_089736_010 Hb_089736_010 Hb_003077_010--Hb_089736_010 Hb_001218_060 Hb_001218_060 Hb_003077_010--Hb_001218_060 Hb_002121_030 Hb_002121_030 Hb_003077_010--Hb_002121_030 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_000500_330--Hb_005116_130 Hb_000500_330--Hb_046590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.403459 1.81332 18.1466 3.04584 0.149679 0.0614959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246325 0.116243 0 0.498359 5.08131

CAGE analysis