Hb_000494_040

Information

Type -
Description -
Location Contig494: 26959-30856
Sequence    

Annotation

kegg
ID rcu:RCOM_1608680
description Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative (EC:3.1.3.16)
nr
ID XP_012083664.1
description PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
swissprot
ID Q9ZQP1
description Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2
trembl
ID A0A067K1C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14599 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase dsp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45398: 27470-28391 , PASA_asmbl_45399: 28408-28519 , PASA_asmbl_45400: 29277-30694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_040 0.0 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
2 Hb_000606_090 0.0696183492 - - Far upstream element-binding protein, putative [Ricinus communis]
3 Hb_001135_060 0.0776181735 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
4 Hb_005862_010 0.0788683701 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
5 Hb_000373_240 0.0841113815 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
6 Hb_163950_030 0.0870738402 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
7 Hb_000010_090 0.0880664678 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
8 Hb_012092_010 0.0884848333 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
9 Hb_002495_040 0.0887574018 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
10 Hb_003030_070 0.0895814419 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
11 Hb_003001_120 0.0918147728 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
12 Hb_144598_030 0.0927937993 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
13 Hb_010381_120 0.092916334 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_002616_050 0.0932898719 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
15 Hb_004072_020 0.0937038175 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
16 Hb_000053_130 0.0945948697 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
17 Hb_001369_180 0.0952909041 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
18 Hb_000889_020 0.0956214615 - - ribosome biogenesis protein brix, putative [Ricinus communis]
19 Hb_002107_160 0.0959063474 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
20 Hb_002391_300 0.0965027063 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000494_040 Hb_000494_040 Hb_000606_090 Hb_000606_090 Hb_000494_040--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000494_040--Hb_001135_060 Hb_005862_010 Hb_005862_010 Hb_000494_040--Hb_005862_010 Hb_000373_240 Hb_000373_240 Hb_000494_040--Hb_000373_240 Hb_163950_030 Hb_163950_030 Hb_000494_040--Hb_163950_030 Hb_000010_090 Hb_000010_090 Hb_000494_040--Hb_000010_090 Hb_000606_090--Hb_001135_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_001444_010 Hb_001444_010 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110 Hb_033642_030 Hb_033642_030 Hb_001135_060--Hb_033642_030 Hb_032050_040 Hb_032050_040 Hb_001135_060--Hb_032050_040 Hb_002716_130 Hb_002716_130 Hb_001135_060--Hb_002716_130 Hb_001135_060--Hb_003665_060 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_144598_030 Hb_144598_030 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_002391_300 Hb_002391_300 Hb_000373_240--Hb_002391_300 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_000690_130 Hb_000690_130 Hb_000373_240--Hb_000690_130 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_009694_010 Hb_009694_010 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_002184_150 Hb_002184_150 Hb_163950_030--Hb_002184_150 Hb_163950_030--Hb_000606_090 Hb_000618_030 Hb_000618_030 Hb_000010_090--Hb_000618_030 Hb_000299_040 Hb_000299_040 Hb_000010_090--Hb_000299_040 Hb_000053_130 Hb_000053_130 Hb_000010_090--Hb_000053_130 Hb_000451_010 Hb_000451_010 Hb_000010_090--Hb_000451_010 Hb_073171_040 Hb_073171_040 Hb_000010_090--Hb_073171_040 Hb_003728_080 Hb_003728_080 Hb_000010_090--Hb_003728_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.0594 11.7555 26.2355 21.6368 32.338 63.3256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3016 28.1218 25.0146 14.2659 20.2673

CAGE analysis