Hb_000494_070

Information

Type -
Description -
Location Contig494: 42336-56819
Sequence    

Annotation

kegg
ID rcu:RCOM_1608630
description ubiquitin-protein ligase, putative
nr
ID XP_012083660.1
description PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
swissprot
ID O22161
description Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1
trembl
ID A0A067K975
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14596 PE=4 SV=1
Gene Ontology
ID GO:0016874
description protein arabidillo 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45404: 42474-43257 , PASA_asmbl_45405: 43955-44189 , PASA_asmbl_45408: 56225-56564
cDNA
(Sanger)
(ID:Location)		 038_E06.ab1: 42474-43250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_070 0.0 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
2 Hb_003411_040 0.0636418012 - - unnamed protein product [Coffea canephora]
3 Hb_000207_180 0.0640891423 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
4 Hb_001550_060 0.0672447436 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
5 Hb_000792_010 0.0684425926 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
6 Hb_000656_380 0.0697350404 - - PREDICTED: exportin-T [Jatropha curcas]
7 Hb_000028_480 0.0703592274 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
8 Hb_000731_270 0.0705693228 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
9 Hb_006420_040 0.0708555417 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
10 Hb_000347_070 0.0717523558 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010174_110 0.0725099216 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
12 Hb_000592_030 0.0726841751 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
13 Hb_020378_030 0.0739781646 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
14 Hb_001814_030 0.0745545406 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
15 Hb_017862_020 0.0749455605 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
16 Hb_009270_020 0.0755822591 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
17 Hb_004724_150 0.0758291288 - - expressed protein, putative [Ricinus communis]
18 Hb_003029_110 0.0767780795 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
19 Hb_000617_180 0.0768529309 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
20 Hb_001341_170 0.0770517972 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000494_070 Hb_000494_070 Hb_003411_040 Hb_003411_040 Hb_000494_070--Hb_003411_040 Hb_000207_180 Hb_000207_180 Hb_000494_070--Hb_000207_180 Hb_001550_060 Hb_001550_060 Hb_000494_070--Hb_001550_060 Hb_000792_010 Hb_000792_010 Hb_000494_070--Hb_000792_010 Hb_000656_380 Hb_000656_380 Hb_000494_070--Hb_000656_380 Hb_000028_480 Hb_000028_480 Hb_000494_070--Hb_000028_480 Hb_001814_030 Hb_001814_030 Hb_003411_040--Hb_001814_030 Hb_003411_040--Hb_000792_010 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_004567_090 Hb_004567_090 Hb_003411_040--Hb_004567_090 Hb_000111_290 Hb_000111_290 Hb_003411_040--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003411_040--Hb_001417_030 Hb_009270_020 Hb_009270_020 Hb_000207_180--Hb_009270_020 Hb_000441_120 Hb_000441_120 Hb_000207_180--Hb_000441_120 Hb_017862_020 Hb_017862_020 Hb_000207_180--Hb_017862_020 Hb_000347_070 Hb_000347_070 Hb_000207_180--Hb_000347_070 Hb_006420_040 Hb_006420_040 Hb_000207_180--Hb_006420_040 Hb_000731_270 Hb_000731_270 Hb_000207_180--Hb_000731_270 Hb_001550_060--Hb_006420_040 Hb_012395_140 Hb_012395_140 Hb_001550_060--Hb_012395_140 Hb_003206_130 Hb_003206_130 Hb_001550_060--Hb_003206_130 Hb_000025_320 Hb_000025_320 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_000395_070 Hb_000395_070 Hb_001550_060--Hb_000395_070 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_000792_010--Hb_002518_260 Hb_000792_010--Hb_000028_480 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_000012_260 Hb_000012_260 Hb_000656_380--Hb_000012_260 Hb_000173_490 Hb_000173_490 Hb_000656_380--Hb_000173_490 Hb_000579_230 Hb_000579_230 Hb_000656_380--Hb_000579_230 Hb_001946_340 Hb_001946_340 Hb_000656_380--Hb_001946_340 Hb_002784_020 Hb_002784_020 Hb_000656_380--Hb_002784_020 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50265 5.54226 3.92817 3.28393 5.67833 6.5052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34134 3.64544 6.06371 6.38325 4.92193

CAGE analysis