Hb_000494_080

Information

Type -
Description -
Location Contig494: 56947-62451
Sequence    

Annotation

kegg
ID rcu:RCOM_1608620
description Palmitoyl-protein thioesterase 1 precursor, putative (EC:3.1.2.22)
nr
ID XP_002511600.1
description Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
swissprot
ID Q20390
description Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2
trembl
ID B9RD11
description Palmitoyl-protein thioesterase 1, putative OS=Ricinus communis GN=RCOM_1608620 PE=4 SV=1
Gene Ontology
ID GO:0044444
description palmitoyl-protein thioesterase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45409: 57113-62381 , PASA_asmbl_45410: 57167-62369 , PASA_asmbl_45411: 59199-59458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_080 0.0 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
2 Hb_000635_040 0.0818794373 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
3 Hb_003929_170 0.083575529 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
4 Hb_005895_010 0.0913656679 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
5 Hb_001087_030 0.092821126 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
6 Hb_002876_320 0.0939566456 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
7 Hb_002965_040 0.094134226 - - drought-responsive family protein [Populus trichocarpa]
8 Hb_000362_170 0.0962969567 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_003688_090 0.0976085353 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
10 Hb_001002_060 0.0991452806 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
11 Hb_007800_020 0.0995642854 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
12 Hb_000608_110 0.0996409245 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
13 Hb_002485_030 0.1012017004 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
14 Hb_010150_020 0.1012482145 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
15 Hb_000239_060 0.1047581301 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002311_380 0.1048227466 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
17 Hb_000373_080 0.1060989294 - - PREDICTED: serine decarboxylase [Jatropha curcas]
18 Hb_000637_140 0.1071435044 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
19 Hb_002398_030 0.1076113059 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_000599_080 0.1077065832 - - PREDICTED: TOM1-like protein 1 [Malus domestica]

Gene co-expression network

sample Hb_000494_080 Hb_000494_080 Hb_000635_040 Hb_000635_040 Hb_000494_080--Hb_000635_040 Hb_003929_170 Hb_003929_170 Hb_000494_080--Hb_003929_170 Hb_005895_010 Hb_005895_010 Hb_000494_080--Hb_005895_010 Hb_001087_030 Hb_001087_030 Hb_000494_080--Hb_001087_030 Hb_002876_320 Hb_002876_320 Hb_000494_080--Hb_002876_320 Hb_002965_040 Hb_002965_040 Hb_000494_080--Hb_002965_040 Hb_007800_020 Hb_007800_020 Hb_000635_040--Hb_007800_020 Hb_000130_420 Hb_000130_420 Hb_000635_040--Hb_000130_420 Hb_000046_570 Hb_000046_570 Hb_000635_040--Hb_000046_570 Hb_000362_170 Hb_000362_170 Hb_000635_040--Hb_000362_170 Hb_000567_190 Hb_000567_190 Hb_000635_040--Hb_000567_190 Hb_008226_090 Hb_008226_090 Hb_000635_040--Hb_008226_090 Hb_003929_170--Hb_001087_030 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_005895_010--Hb_007800_020 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050 Hb_000787_150 Hb_000787_150 Hb_002965_040--Hb_000787_150 Hb_003096_060 Hb_003096_060 Hb_002965_040--Hb_003096_060 Hb_001258_100 Hb_001258_100 Hb_002965_040--Hb_001258_100 Hb_000227_270 Hb_000227_270 Hb_002965_040--Hb_000227_270 Hb_000205_130 Hb_000205_130 Hb_002965_040--Hb_000205_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6165 17.1047 30.4878 32.1305 15.3791 22.2361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0629 8.35714 10.7968 9.82449 16.6415

CAGE analysis