Hb_000494_100

Information

Type -
Description -
Location Contig494: 91385-98134
Sequence    

Annotation

kegg
ID rcu:RCOM_1608600
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID XP_002511598.1
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
swissprot
ID P22180
description Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1
trembl
ID B9RD09
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative OS=Ricinus communis GN=RCOM_1608600 PE=4 SV=1
Gene Ontology
ID GO:0016021
description h(\+)-transporting atpase plant fungi plasma membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000494_100 0.0 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
2 Hb_000124_020 0.1427571231 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
3 Hb_064997_010 0.1463803496 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
4 Hb_011381_100 0.1477635515 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
5 Hb_000157_010 0.1521146813 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_010863_080 0.1524708792 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
7 Hb_000162_040 0.1532288338 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
8 Hb_000186_240 0.1533644956 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
9 Hb_000622_310 0.1603592931 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
10 Hb_001856_020 0.1606918156 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
11 Hb_006935_050 0.1610460999 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
12 Hb_005333_130 0.1666558417 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008311_010 0.1681389797 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
14 Hb_006551_010 0.1691122196 - - electron transporter, putative [Ricinus communis]
15 Hb_182424_010 0.1698401181 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
16 Hb_002498_060 0.1713738717 - - ATP binding protein, putative [Ricinus communis]
17 Hb_003055_120 0.1720527907 - - Protein C20orf11, putative [Ricinus communis]
18 Hb_000179_210 0.1723335622 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
19 Hb_000056_100 0.1734038006 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_000260_120 0.174558022 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000494_100 Hb_000494_100 Hb_000124_020 Hb_000124_020 Hb_000494_100--Hb_000124_020 Hb_064997_010 Hb_064997_010 Hb_000494_100--Hb_064997_010 Hb_011381_100 Hb_011381_100 Hb_000494_100--Hb_011381_100 Hb_000157_010 Hb_000157_010 Hb_000494_100--Hb_000157_010 Hb_010863_080 Hb_010863_080 Hb_000494_100--Hb_010863_080 Hb_000162_040 Hb_000162_040 Hb_000494_100--Hb_000162_040 Hb_000622_310 Hb_000622_310 Hb_000124_020--Hb_000622_310 Hb_000056_100 Hb_000056_100 Hb_000124_020--Hb_000056_100 Hb_000124_020--Hb_010863_080 Hb_000179_210 Hb_000179_210 Hb_000124_020--Hb_000179_210 Hb_000116_470 Hb_000116_470 Hb_000124_020--Hb_000116_470 Hb_005147_090 Hb_005147_090 Hb_000124_020--Hb_005147_090 Hb_001153_220 Hb_001153_220 Hb_064997_010--Hb_001153_220 Hb_003018_190 Hb_003018_190 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_000997_400 Hb_000997_400 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_025214_130 Hb_025214_130 Hb_064997_010--Hb_025214_130 Hb_029866_040 Hb_029866_040 Hb_011381_100--Hb_029866_040 Hb_000377_060 Hb_000377_060 Hb_011381_100--Hb_000377_060 Hb_003055_120 Hb_003055_120 Hb_011381_100--Hb_003055_120 Hb_005431_010 Hb_005431_010 Hb_011381_100--Hb_005431_010 Hb_000510_320 Hb_000510_320 Hb_011381_100--Hb_000510_320 Hb_000009_160 Hb_000009_160 Hb_011381_100--Hb_000009_160 Hb_152439_020 Hb_152439_020 Hb_000157_010--Hb_152439_020 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_000157_010--Hb_001153_220 Hb_001856_020 Hb_001856_020 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_003297_030 Hb_003297_030 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_027402_070 Hb_027402_070 Hb_000162_040--Hb_027402_070 Hb_004306_060 Hb_004306_060 Hb_000162_040--Hb_004306_060 Hb_023292_010 Hb_023292_010 Hb_000162_040--Hb_023292_010 Hb_004128_180 Hb_004128_180 Hb_000162_040--Hb_004128_180 Hb_000162_040--Hb_064997_010 Hb_001633_170 Hb_001633_170 Hb_000162_040--Hb_001633_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126482 0.0335109 0.0389549 0.0733117 0.142841 0.154041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0768107 0.16621 0.287575 0.0300186 0

CAGE analysis