Hb_000496_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig496: 36261-37781
Sequence    

Annotation

kegg
ID rcu:RCOM_0993030
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012086017.1
description PREDICTED: transcription factor bHLH3 [Jatropha curcas]
swissprot
ID O23487
description Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1
trembl
ID B9S4V3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0993030 PE=4 SV=1
Gene Ontology
ID GO:0032440
description transcription factor bhlh3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45466: 35933-38291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000496_060 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
2 Hb_000025_120 0.0542443776 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
3 Hb_005432_030 0.0681592552 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
4 Hb_003175_040 0.0806502389 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
5 Hb_117134_010 0.0810663445 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
6 Hb_014720_080 0.0825189809 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
7 Hb_001833_110 0.0840825778 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002016_100 0.0874307937 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
9 Hb_000834_270 0.0875911737 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
10 Hb_002027_210 0.0883793133 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
11 Hb_000625_070 0.0892875239 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
12 Hb_001105_070 0.0902581549 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
13 Hb_004678_050 0.0912790302 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
14 Hb_005398_030 0.0914379564 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
15 Hb_000174_070 0.0915690893 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
16 Hb_000170_010 0.0918428144 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_002411_200 0.0926216782 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004724_420 0.0930908448 - - fucose synthetase, putative [Ricinus communis]
19 Hb_003408_020 0.093122903 - - hypothetical protein RCOM_0453040 [Ricinus communis]
20 Hb_001691_210 0.0932044874 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]

Gene co-expression network

sample Hb_000496_060 Hb_000496_060 Hb_000025_120 Hb_000025_120 Hb_000496_060--Hb_000025_120 Hb_005432_030 Hb_005432_030 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_117134_010 Hb_117134_010 Hb_000496_060--Hb_117134_010 Hb_014720_080 Hb_014720_080 Hb_000496_060--Hb_014720_080 Hb_001833_110 Hb_001833_110 Hb_000496_060--Hb_001833_110 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_000170_010 Hb_000170_010 Hb_005432_030--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_005432_030--Hb_002027_210 Hb_000625_070 Hb_000625_070 Hb_005432_030--Hb_000625_070 Hb_004108_230 Hb_004108_230 Hb_005432_030--Hb_004108_230 Hb_005432_030--Hb_003175_040 Hb_003175_040--Hb_004108_230 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_002918_200 Hb_002918_200 Hb_003175_040--Hb_002918_200 Hb_004837_140 Hb_004837_140 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_005398_030 Hb_005398_030 Hb_117134_010--Hb_005398_030 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_117134_010--Hb_001833_110 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5936 12.3629 9.39785 17.5705 17.5003 37.5297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.0255 51.2115 53.1332 19.4149 15.1334

CAGE analysis