Hb_000496_110

Information

Type -
Description -
Location Contig496: 88684-91514
Sequence    

Annotation

kegg
ID rcu:RCOM_0992860
description hypothetical protein
nr
ID XP_012092477.1
description PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
swissprot
ID F4INW9
description Probable myosin-binding protein 4 OS=Arabidopsis thaliana GN=MYOB4 PE=3 SV=1
trembl
ID B9S4U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0992860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45472: 90322-90650 , PASA_asmbl_45474: 91423-91665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000496_110 0.0 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
2 Hb_002316_080 0.1543452121 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
3 Hb_000246_130 0.1706664557 - - tubulin alpha chain, putative [Ricinus communis]
4 Hb_000300_410 0.1732411256 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
5 Hb_001989_100 0.1845852369 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
6 Hb_011310_040 0.1890732506 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
7 Hb_000107_350 0.1924579266 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
8 Hb_001369_630 0.1957345044 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
9 Hb_034726_010 0.1972292318 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_020805_140 0.1978520639 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
11 Hb_012090_030 0.202425849 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
12 Hb_007925_010 0.2036239281 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
13 Hb_001004_080 0.2036964699 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
14 Hb_000935_040 0.2046327624 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_010883_180 0.2047234329 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
16 Hb_007574_040 0.2051093727 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
17 Hb_000808_150 0.2054490874 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
18 Hb_001584_240 0.2056510464 - - ADP-ribosylation factor [Gossypium barbadense]
19 Hb_008695_220 0.2077483315 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
20 Hb_007416_100 0.2078642954 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000496_110 Hb_000496_110 Hb_002316_080 Hb_002316_080 Hb_000496_110--Hb_002316_080 Hb_000246_130 Hb_000246_130 Hb_000496_110--Hb_000246_130 Hb_000300_410 Hb_000300_410 Hb_000496_110--Hb_000300_410 Hb_001989_100 Hb_001989_100 Hb_000496_110--Hb_001989_100 Hb_011310_040 Hb_011310_040 Hb_000496_110--Hb_011310_040 Hb_000107_350 Hb_000107_350 Hb_000496_110--Hb_000107_350 Hb_010883_180 Hb_010883_180 Hb_002316_080--Hb_010883_180 Hb_002316_080--Hb_000246_130 Hb_000098_170 Hb_000098_170 Hb_002316_080--Hb_000098_170 Hb_007483_060 Hb_007483_060 Hb_002316_080--Hb_007483_060 Hb_019516_060 Hb_019516_060 Hb_002316_080--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_002316_080--Hb_000086_090 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_000300_410--Hb_001989_100 Hb_002157_270 Hb_002157_270 Hb_000300_410--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000300_410--Hb_012707_010 Hb_015675_030 Hb_015675_030 Hb_000300_410--Hb_015675_030 Hb_000950_030 Hb_000950_030 Hb_000300_410--Hb_000950_030 Hb_000300_410--Hb_011310_040 Hb_001989_100--Hb_012707_010 Hb_001989_100--Hb_000950_030 Hb_020805_140 Hb_020805_140 Hb_001989_100--Hb_020805_140 Hb_005976_010 Hb_005976_010 Hb_001989_100--Hb_005976_010 Hb_002596_080 Hb_002596_080 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_011310_040--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_011310_040--Hb_003226_250 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_000649_040 Hb_000649_040 Hb_000107_350--Hb_000649_040 Hb_000077_310 Hb_000077_310 Hb_000107_350--Hb_000077_310 Hb_000107_350--Hb_011310_040 Hb_000808_150 Hb_000808_150 Hb_000107_350--Hb_000808_150 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.503149 0.150383 1.3868 6.21114 0.0892734 0.175576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.288811 1.40148 0.843925 0.270578 2.71585

CAGE analysis