Hb_000497_030

Information

Type -
Description -
Location Contig497: 14097-14347
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A061R5T0
description Photosystem II Psb27 protein OS=Tetraselmis sp. GSL018 GN=PSB27 PE=4 SV=1
Gene Ontology
ID GO:0009535
description photosystem ii repair protein psb27- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_F21.ab1: 13750-23518 , 009_E19.ab1: 13743-23521 , 015_D24.ab1: 13743-23419 , 031_F11.ab1: 13749-23421 , 041_H08.ab1: 13749-23489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_030 0.0 - - -
2 Hb_000699_220 0.0572618595 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
3 Hb_006717_060 0.0582760281 - - PREDICTED: peroxidase 42 [Jatropha curcas]
4 Hb_003580_020 0.058898934 - - conserved hypothetical protein [Ricinus communis]
5 Hb_071079_040 0.0624361176 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
6 Hb_001349_040 0.069345141 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
7 Hb_000083_200 0.0710347904 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000462_120 0.0799577723 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
9 Hb_002014_130 0.0801335748 - - conserved hypothetical protein [Ricinus communis]
10 Hb_118934_010 0.080698557 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
11 Hb_031330_010 0.0828170608 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
12 Hb_005291_020 0.0842135002 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000645_230 0.0867388118 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
14 Hb_005616_020 0.0869951164 - - kinase, putative [Ricinus communis]
15 Hb_006573_120 0.0888951947 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
16 Hb_009421_060 0.0909837787 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
17 Hb_012114_090 0.0921602178 - - tubulin beta chain, putative [Ricinus communis]
18 Hb_004884_040 0.0933122479 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
19 Hb_009079_010 0.0935043054 - - JHL18I08.8 [Jatropha curcas]
20 Hb_000310_050 0.0937337306 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000497_030 Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_000497_030--Hb_000699_220 Hb_006717_060 Hb_006717_060 Hb_000497_030--Hb_006717_060 Hb_003580_020 Hb_003580_020 Hb_000497_030--Hb_003580_020 Hb_071079_040 Hb_071079_040 Hb_000497_030--Hb_071079_040 Hb_001349_040 Hb_001349_040 Hb_000497_030--Hb_001349_040 Hb_000083_200 Hb_000083_200 Hb_000497_030--Hb_000083_200 Hb_000699_220--Hb_006717_060 Hb_012114_090 Hb_012114_090 Hb_000699_220--Hb_012114_090 Hb_000699_220--Hb_001349_040 Hb_000336_120 Hb_000336_120 Hb_000699_220--Hb_000336_120 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020 Hb_006717_060--Hb_003580_020 Hb_006717_060--Hb_012114_090 Hb_006717_060--Hb_001349_040 Hb_006717_060--Hb_000336_120 Hb_005291_020 Hb_005291_020 Hb_003580_020--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_003580_020--Hb_000462_120 Hb_003580_020--Hb_000699_220 Hb_002014_130 Hb_002014_130 Hb_003580_020--Hb_002014_130 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_031330_010 Hb_031330_010 Hb_071079_040--Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_071079_040--Hb_000645_230 Hb_071079_040--Hb_006717_060 Hb_001349_040--Hb_000083_200 Hb_112950_010 Hb_112950_010 Hb_001349_040--Hb_112950_010 Hb_000310_050 Hb_000310_050 Hb_001349_040--Hb_000310_050 Hb_000083_200--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_000083_200--Hb_009421_060 Hb_000083_200--Hb_006717_060 Hb_000083_200--Hb_000699_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.74829 14.0214 155.931 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.50753 34.2963

CAGE analysis