Hb_000497_120

Information

Type -
Description -
Location Contig497: 125754-126536
Sequence    

Annotation

kegg
ID rcu:RCOM_1438780
description hypothetical protein
nr
ID XP_002512700.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RG31
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438780 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromatin assembly factor 1 subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005064_040 0.0698957645 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
3 Hb_031340_030 0.0829766996 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
4 Hb_027141_010 0.0875861879 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_159015_010 0.0932556973 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_000140_260 0.0997459497 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
7 Hb_000205_210 0.102281034 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
8 Hb_000081_020 0.1024703266 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
9 Hb_000539_080 0.1063507383 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
10 Hb_011486_030 0.1165210979 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
11 Hb_076895_020 0.1208883933 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
12 Hb_000301_030 0.1241076737 - - PREDICTED: pectate lyase-like [Jatropha curcas]
13 Hb_004200_040 0.124378032 - - laccase, putative [Ricinus communis]
14 Hb_116478_010 0.1293628278 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
15 Hb_000948_070 0.1337233114 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
16 Hb_012660_010 0.1368624717 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
17 Hb_000984_080 0.1374990471 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_002182_050 0.1389529749 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
19 Hb_001901_010 0.1390463759 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
20 Hb_020332_040 0.1404305776 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000497_120 Hb_000497_120 Hb_005064_040 Hb_005064_040 Hb_000497_120--Hb_005064_040 Hb_031340_030 Hb_031340_030 Hb_000497_120--Hb_031340_030 Hb_027141_010 Hb_027141_010 Hb_000497_120--Hb_027141_010 Hb_159015_010 Hb_159015_010 Hb_000497_120--Hb_159015_010 Hb_000140_260 Hb_000140_260 Hb_000497_120--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_000497_120--Hb_000205_210 Hb_000081_020 Hb_000081_020 Hb_005064_040--Hb_000081_020 Hb_005064_040--Hb_031340_030 Hb_000539_080 Hb_000539_080 Hb_005064_040--Hb_000539_080 Hb_005064_040--Hb_159015_010 Hb_005064_040--Hb_000140_260 Hb_031340_030--Hb_000081_020 Hb_031340_030--Hb_000539_080 Hb_031340_030--Hb_000140_260 Hb_002999_090 Hb_002999_090 Hb_031340_030--Hb_002999_090 Hb_027141_010--Hb_000140_260 Hb_076895_020 Hb_076895_020 Hb_027141_010--Hb_076895_020 Hb_020332_040 Hb_020332_040 Hb_027141_010--Hb_020332_040 Hb_004200_040 Hb_004200_040 Hb_027141_010--Hb_004200_040 Hb_027141_010--Hb_000539_080 Hb_027141_010--Hb_000205_210 Hb_116478_010 Hb_116478_010 Hb_159015_010--Hb_116478_010 Hb_002182_050 Hb_002182_050 Hb_159015_010--Hb_002182_050 Hb_000487_240 Hb_000487_240 Hb_159015_010--Hb_000487_240 Hb_000911_050 Hb_000911_050 Hb_159015_010--Hb_000911_050 Hb_000140_260--Hb_004200_040 Hb_000140_260--Hb_000205_210 Hb_000140_260--Hb_076895_020 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_000205_210--Hb_004200_040 Hb_003900_050 Hb_003900_050 Hb_000205_210--Hb_003900_050 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000205_210--Hb_000984_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.88221 0.119086 4.00007 0 0.0369499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 21.8523 1.09369

CAGE analysis