Hb_000497_140

Information

Type -
Description -
Location Contig497: 154216-156216
Sequence    

Annotation

kegg
ID vvi:100255586
description pentatricopeptide repeat-containing protein DOT4, chloroplastic-like
nr
ID XP_012088677.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
swissprot
ID Q9SN39
description Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1
trembl
ID A0A067JUQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23067 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45519: 154478-154674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
2 Hb_000016_110 0.0808482978 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
3 Hb_005399_010 0.0830844759 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_006091_030 0.0842353102 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
5 Hb_000106_040 0.0847779458 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
6 Hb_000077_130 0.0891663775 - - PREDICTED: callose synthase 12 [Jatropha curcas]
7 Hb_000086_590 0.1000100449 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
8 Hb_011639_050 0.103866355 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000490_030 0.1042707513 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
10 Hb_004055_040 0.105238259 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
11 Hb_002874_070 0.1070768596 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
12 Hb_000369_060 0.1072698255 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
13 Hb_041091_010 0.1079071366 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
14 Hb_002928_060 0.1109248575 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
15 Hb_000206_150 0.1113969797 - - unnamed protein product [Coffea canephora]
16 Hb_001871_040 0.1114927036 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
17 Hb_012395_190 0.1155939843 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
18 Hb_000367_290 0.1156636737 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
19 Hb_123777_030 0.116219772 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
20 Hb_001936_050 0.1164830457 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]

Gene co-expression network

sample Hb_000497_140 Hb_000497_140 Hb_000016_110 Hb_000016_110 Hb_000497_140--Hb_000016_110 Hb_005399_010 Hb_005399_010 Hb_000497_140--Hb_005399_010 Hb_006091_030 Hb_006091_030 Hb_000497_140--Hb_006091_030 Hb_000106_040 Hb_000106_040 Hb_000497_140--Hb_000106_040 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590 Hb_000016_110--Hb_005399_010 Hb_000016_110--Hb_006091_030 Hb_022288_010 Hb_022288_010 Hb_000016_110--Hb_022288_010 Hb_041091_010 Hb_041091_010 Hb_000016_110--Hb_041091_010 Hb_012016_020 Hb_012016_020 Hb_000016_110--Hb_012016_020 Hb_005399_010--Hb_012016_020 Hb_001871_040 Hb_001871_040 Hb_005399_010--Hb_001871_040 Hb_005399_010--Hb_000106_040 Hb_001431_070 Hb_001431_070 Hb_005399_010--Hb_001431_070 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_000206_150 Hb_000206_150 Hb_000106_040--Hb_000206_150 Hb_000106_040--Hb_000016_110 Hb_000367_290 Hb_000367_290 Hb_000106_040--Hb_000367_290 Hb_029866_130 Hb_029866_130 Hb_000106_040--Hb_029866_130 Hb_001584_110 Hb_001584_110 Hb_000077_130--Hb_001584_110 Hb_012055_020 Hb_012055_020 Hb_000077_130--Hb_012055_020 Hb_000236_250 Hb_000236_250 Hb_000077_130--Hb_000236_250 Hb_000077_130--Hb_002874_070 Hb_000077_130--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000086_590--Hb_010710_010 Hb_000086_590--Hb_006091_030 Hb_000413_180 Hb_000413_180 Hb_000086_590--Hb_000413_180 Hb_123777_030 Hb_123777_030 Hb_000086_590--Hb_123777_030 Hb_000723_260 Hb_000723_260 Hb_000086_590--Hb_000723_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97809 2.09725 0.550738 0.727927 5.6275 6.98975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35335 1.20684 5.28391 1.61691 0.9752

CAGE analysis