Hb_000497_200

Information

Type -
Description -
Location Contig497: 172921-173368
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45526: 172295-172445 , PASA_asmbl_45528: 172616-173205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_200 0.0 - - -
2 Hb_005843_130 0.2103289843 - - hypothetical protein JCGZ_12389 [Jatropha curcas]
3 Hb_080332_010 0.2131138293 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
4 Hb_000248_100 0.2156373374 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
5 Hb_000098_200 0.2234015641 - - PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
6 Hb_001085_070 0.2267269714 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
7 Hb_000755_060 0.2287851672 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104424740 [Eucalyptus grandis]
8 Hb_003633_090 0.229200091 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
9 Hb_001018_060 0.2303751316 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
10 Hb_001931_030 0.2344548661 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
11 Hb_001103_060 0.2351122741 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
12 Hb_005180_010 0.2360517617 - - cyclophilin [Hevea brasiliensis]
13 Hb_002740_090 0.2361518701 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
14 Hb_004204_210 0.2368184497 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
15 Hb_103688_010 0.2374169292 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
16 Hb_002808_020 0.2385674937 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
17 Hb_000830_020 0.2390244804 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
18 Hb_000500_220 0.2404901356 - - PREDICTED: intersectin-1 [Jatropha curcas]
19 Hb_001008_100 0.2412895521 - - JHL25H03.10 [Jatropha curcas]
20 Hb_012180_010 0.2414951014 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]

Gene co-expression network

sample Hb_000497_200 Hb_000497_200 Hb_005843_130 Hb_005843_130 Hb_000497_200--Hb_005843_130 Hb_080332_010 Hb_080332_010 Hb_000497_200--Hb_080332_010 Hb_000248_100 Hb_000248_100 Hb_000497_200--Hb_000248_100 Hb_000098_200 Hb_000098_200 Hb_000497_200--Hb_000098_200 Hb_001085_070 Hb_001085_070 Hb_000497_200--Hb_001085_070 Hb_000755_060 Hb_000755_060 Hb_000497_200--Hb_000755_060 Hb_005843_130--Hb_080332_010 Hb_012180_010 Hb_012180_010 Hb_005843_130--Hb_012180_010 Hb_044653_030 Hb_044653_030 Hb_005843_130--Hb_044653_030 Hb_063716_090 Hb_063716_090 Hb_005843_130--Hb_063716_090 Hb_005843_130--Hb_000755_060 Hb_010315_100 Hb_010315_100 Hb_080332_010--Hb_010315_100 Hb_003430_080 Hb_003430_080 Hb_080332_010--Hb_003430_080 Hb_000926_340 Hb_000926_340 Hb_080332_010--Hb_000926_340 Hb_000318_040 Hb_000318_040 Hb_080332_010--Hb_000318_040 Hb_028487_130 Hb_028487_130 Hb_080332_010--Hb_028487_130 Hb_002250_050 Hb_002250_050 Hb_080332_010--Hb_002250_050 Hb_158845_060 Hb_158845_060 Hb_000248_100--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_000248_100--Hb_024758_020 Hb_000094_150 Hb_000094_150 Hb_000248_100--Hb_000094_150 Hb_003964_110 Hb_003964_110 Hb_000248_100--Hb_003964_110 Hb_003050_150 Hb_003050_150 Hb_000248_100--Hb_003050_150 Hb_000261_310 Hb_000261_310 Hb_000248_100--Hb_000261_310 Hb_000235_050 Hb_000235_050 Hb_000098_200--Hb_000235_050 Hb_004746_010 Hb_004746_010 Hb_000098_200--Hb_004746_010 Hb_000098_200--Hb_000755_060 Hb_000029_440 Hb_000029_440 Hb_000098_200--Hb_000029_440 Hb_000401_010 Hb_000401_010 Hb_000098_200--Hb_000401_010 Hb_135959_010 Hb_135959_010 Hb_000098_200--Hb_135959_010 Hb_084994_010 Hb_084994_010 Hb_001085_070--Hb_084994_010 Hb_002740_090 Hb_002740_090 Hb_001085_070--Hb_002740_090 Hb_002808_020 Hb_002808_020 Hb_001085_070--Hb_002808_020 Hb_001892_030 Hb_001892_030 Hb_001085_070--Hb_001892_030 Hb_103688_010 Hb_103688_010 Hb_001085_070--Hb_103688_010 Hb_002639_030 Hb_002639_030 Hb_001085_070--Hb_002639_030 Hb_001227_100 Hb_001227_100 Hb_000755_060--Hb_001227_100 Hb_000755_060--Hb_000029_440 Hb_001080_130 Hb_001080_130 Hb_000755_060--Hb_001080_130 Hb_000755_060--Hb_012180_010 Hb_000720_080 Hb_000720_080 Hb_000755_060--Hb_000720_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.900541 1.57332 1.92562 1.30913 0.606613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18316 0.465183 0 1.68378 1.13527

CAGE analysis