Hb_000497_230

Information

Type -
Description -
Location Contig497: 201195-206969
Sequence    

Annotation

kegg
ID rcu:RCOM_1438710
description zinc finger protein, putative (EC:1.3.1.74)
nr
ID XP_012088685.1
description PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
swissprot
ID Q0WQK2
description Probable protein S-acyltransferase 7 OS=Arabidopsis thaliana GN=PAT07 PE=1 SV=1
trembl
ID A0A067JTD7
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_23073 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45530: 201211-201700 , PASA_asmbl_45531: 201732-206817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_230 0.0 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
2 Hb_018954_020 0.0831735418 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
3 Hb_000197_210 0.0965543425 - - phosphatidylinositol transporter, putative [Ricinus communis]
4 Hb_008406_140 0.1088917932 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_001279_330 0.1163699919 - - Protein bem46, putative [Ricinus communis]
6 Hb_004143_070 0.1192505647 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002159_040 0.1196563481 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
8 Hb_000566_100 0.1206258918 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
9 Hb_000243_320 0.1234155868 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001268_210 0.1239128527 - - zinc finger protein, putative [Ricinus communis]
11 Hb_002249_120 0.1256514478 - - RNA-binding protein, putative [Ricinus communis]
12 Hb_030827_030 0.1283947076 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
13 Hb_000345_530 0.128786474 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
14 Hb_007810_100 0.1316747557 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
15 Hb_014361_100 0.131910732 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
16 Hb_005368_010 0.1349461691 - - PREDICTED: umecyanin-like [Jatropha curcas]
17 Hb_005271_080 0.1353320933 - - receptor kinase, putative [Ricinus communis]
18 Hb_000236_380 0.1358979168 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
19 Hb_002235_130 0.1359319932 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011497_010 0.1367810812 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]

Gene co-expression network

sample Hb_000497_230 Hb_000497_230 Hb_018954_020 Hb_018954_020 Hb_000497_230--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_000497_230--Hb_000197_210 Hb_008406_140 Hb_008406_140 Hb_000497_230--Hb_008406_140 Hb_001279_330 Hb_001279_330 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_002159_040 Hb_002159_040 Hb_000497_230--Hb_002159_040 Hb_018954_020--Hb_002159_040 Hb_018954_020--Hb_008406_140 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_000197_210--Hb_008406_140 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_000424_230 Hb_000424_230 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_005368_010 Hb_005368_010 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_046615_020 Hb_046615_020 Hb_004143_070--Hb_046615_020 Hb_002493_090 Hb_002493_090 Hb_004143_070--Hb_002493_090 Hb_000181_310 Hb_000181_310 Hb_004143_070--Hb_000181_310 Hb_004143_070--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_004143_070--Hb_000244_240 Hb_033594_020 Hb_033594_020 Hb_004143_070--Hb_033594_020 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.0384 7.30367 16.0064 22.7752 48.3798 45.7573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5588 4.34584 18.6109 7.3228 10.0643

CAGE analysis