Hb_000497_250

Information

Type -
Description -
Location Contig497: 210775-214338
Sequence    

Annotation

kegg
ID vvi:100250816
description potassium transporter 5
nr
ID XP_012088686.1
description PREDICTED: potassium transporter 5 [Jatropha curcas]
swissprot
ID Q9M7K4
description Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1
trembl
ID F6HF11
description Potassium transporter OS=Vitis vinifera GN=VIT_01s0011g03020 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45535: 212219-213210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_250 0.0 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
2 Hb_001431_090 0.0880914464 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 47, partial [Camelina sativa]
3 Hb_007617_010 0.1008899338 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
4 Hb_004143_090 0.1033347424 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_001514_030 0.1093211481 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
6 Hb_019516_010 0.1129002048 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
7 Hb_007922_030 0.1155968592 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
8 Hb_001439_080 0.1173386527 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_001021_120 0.1179193973 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
10 Hb_009486_050 0.1213256063 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
11 Hb_168918_010 0.1236023261 - - pectin acetylesterase, putative [Ricinus communis]
12 Hb_000418_110 0.12490461 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
13 Hb_051663_010 0.1257621298 - - receptor-kinase, putative [Ricinus communis]
14 Hb_000009_270 0.1265985445 - - Calmodulin, putative [Ricinus communis]
15 Hb_007221_020 0.1270238411 - - FAD-binding domain-containing family protein [Populus trichocarpa]
16 Hb_000005_240 0.1281371776 - - Shugoshin-1, putative [Ricinus communis]
17 Hb_000134_130 0.1293907206 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
18 Hb_008021_060 0.1296537123 - - Squalene monooxygenase, putative [Ricinus communis]
19 Hb_002609_120 0.1297550115 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
20 Hb_002301_120 0.1297816741 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]

Gene co-expression network

sample Hb_000497_250 Hb_000497_250 Hb_001431_090 Hb_001431_090 Hb_000497_250--Hb_001431_090 Hb_007617_010 Hb_007617_010 Hb_000497_250--Hb_007617_010 Hb_004143_090 Hb_004143_090 Hb_000497_250--Hb_004143_090 Hb_001514_030 Hb_001514_030 Hb_000497_250--Hb_001514_030 Hb_019516_010 Hb_019516_010 Hb_000497_250--Hb_019516_010 Hb_007922_030 Hb_007922_030 Hb_000497_250--Hb_007922_030 Hb_001431_090--Hb_001514_030 Hb_003894_170 Hb_003894_170 Hb_001431_090--Hb_003894_170 Hb_000120_930 Hb_000120_930 Hb_001431_090--Hb_000120_930 Hb_016333_010 Hb_016333_010 Hb_001431_090--Hb_016333_010 Hb_168918_010 Hb_168918_010 Hb_001431_090--Hb_168918_010 Hb_001080_190 Hb_001080_190 Hb_007617_010--Hb_001080_190 Hb_001544_090 Hb_001544_090 Hb_007617_010--Hb_001544_090 Hb_001439_080 Hb_001439_080 Hb_007617_010--Hb_001439_080 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_005976_110 Hb_005976_110 Hb_007617_010--Hb_005976_110 Hb_004453_160 Hb_004453_160 Hb_004143_090--Hb_004453_160 Hb_004410_020 Hb_004410_020 Hb_004143_090--Hb_004410_020 Hb_004143_090--Hb_019516_010 Hb_000375_220 Hb_000375_220 Hb_004143_090--Hb_000375_220 Hb_004007_050 Hb_004007_050 Hb_004143_090--Hb_004007_050 Hb_001514_030--Hb_168918_010 Hb_004037_040 Hb_004037_040 Hb_001514_030--Hb_004037_040 Hb_001079_060 Hb_001079_060 Hb_001514_030--Hb_001079_060 Hb_001516_010 Hb_001516_010 Hb_001514_030--Hb_001516_010 Hb_004122_010 Hb_004122_010 Hb_001514_030--Hb_004122_010 Hb_007218_040 Hb_007218_040 Hb_001514_030--Hb_007218_040 Hb_007221_020 Hb_007221_020 Hb_019516_010--Hb_007221_020 Hb_000134_130 Hb_000134_130 Hb_019516_010--Hb_000134_130 Hb_002894_060 Hb_002894_060 Hb_019516_010--Hb_002894_060 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_019516_010--Hb_004007_050 Hb_007922_030--Hb_007221_020 Hb_008021_060 Hb_008021_060 Hb_007922_030--Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_007922_030--Hb_001652_100 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_007922_030--Hb_031321_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0174324 0.00641722 0.379743 0.311815 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0165701 0.177391

CAGE analysis