Hb_000497_310

Information

Type -
Description -
Location Contig497: 265249-270610
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002041_010 0.0320986747 - - -
3 Hb_015824_020 0.0592493921 - - -
4 Hb_023386_030 0.0598968035 - - -
5 Hb_000284_050 0.0696707416 - - hypothetical protein L484_026849 [Morus notabilis]
6 Hb_004968_090 0.1042728902 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
7 Hb_005666_030 0.1058138672 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
8 Hb_010053_050 0.1069358878 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
9 Hb_010053_060 0.1109942224 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_004161_040 0.1152449704 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
11 Hb_002630_030 0.1182065352 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
12 Hb_001691_130 0.1205891914 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
13 Hb_005551_030 0.1207528438 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
14 Hb_004375_020 0.1354966469 - - hypothetical protein VITISV_034560 [Vitis vinifera]
15 Hb_001231_020 0.1356741462 - - -
16 Hb_003898_010 0.1382463674 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_010523_020 0.1382861368 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002281_060 0.138457527 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
19 Hb_001115_060 0.1385369091 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
20 Hb_000668_030 0.1385811711 - - -

Gene co-expression network

sample Hb_000497_310 Hb_000497_310 Hb_002041_010 Hb_002041_010 Hb_000497_310--Hb_002041_010 Hb_015824_020 Hb_015824_020 Hb_000497_310--Hb_015824_020 Hb_023386_030 Hb_023386_030 Hb_000497_310--Hb_023386_030 Hb_000284_050 Hb_000284_050 Hb_000497_310--Hb_000284_050 Hb_004968_090 Hb_004968_090 Hb_000497_310--Hb_004968_090 Hb_005666_030 Hb_005666_030 Hb_000497_310--Hb_005666_030 Hb_002041_010--Hb_000284_050 Hb_002041_010--Hb_015824_020 Hb_002041_010--Hb_023386_030 Hb_010053_050 Hb_010053_050 Hb_002041_010--Hb_010053_050 Hb_010053_060 Hb_010053_060 Hb_002041_010--Hb_010053_060 Hb_015824_020--Hb_023386_030 Hb_015824_020--Hb_005666_030 Hb_015824_020--Hb_004968_090 Hb_005551_030 Hb_005551_030 Hb_015824_020--Hb_005551_030 Hb_023386_030--Hb_005666_030 Hb_023386_030--Hb_004968_090 Hb_023386_030--Hb_005551_030 Hb_000284_050--Hb_010053_050 Hb_000284_050--Hb_010053_060 Hb_004161_040 Hb_004161_040 Hb_000284_050--Hb_004161_040 Hb_000938_050 Hb_000938_050 Hb_000284_050--Hb_000938_050 Hb_004968_090--Hb_005666_030 Hb_004968_090--Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_004968_090--Hb_001231_020 Hb_001691_130 Hb_001691_130 Hb_004968_090--Hb_001691_130 Hb_106274_010 Hb_106274_010 Hb_004968_090--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_004968_090--Hb_002630_030 Hb_005666_030--Hb_005551_030 Hb_005666_030--Hb_001231_020 Hb_005666_030--Hb_001691_130 Hb_005666_030--Hb_106274_010 Hb_005666_030--Hb_002630_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0132651 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0180886 0.321934

CAGE analysis