Hb_000498_010

Information

Type -
Description -
Location Contig498: 101622-112815
Sequence    

Annotation

kegg
ID tcc:TCM_024191
description DegP protease 10 isoform 1
nr
ID XP_012078920.1
description PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q9FIV6
description Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10 PE=2 SV=1
trembl
ID A0A067KBT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13418 PE=4 SV=1
Gene Ontology
ID GO:0004252
description protease do-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45595: 101753-112662 , PASA_asmbl_45596: 105271-105549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000498_010 0.0 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000390_180 0.0551125777 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
3 Hb_000879_200 0.0626318711 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
4 Hb_000618_030 0.0700505675 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
5 Hb_000853_230 0.0708697197 - - syntaxin, putative [Ricinus communis]
6 Hb_001926_030 0.0721665019 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
7 Hb_000794_050 0.0732720287 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
8 Hb_023480_010 0.074252668 - - cellular nucleic acid binding protein, putative [Ricinus communis]
9 Hb_007262_020 0.0745041422 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
10 Hb_006620_020 0.0750289921 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
11 Hb_001369_180 0.0750473482 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
12 Hb_009265_080 0.0766089772 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_003813_040 0.0774548347 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
14 Hb_008803_090 0.0774766459 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
15 Hb_030736_100 0.0779051314 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001377_320 0.0781745445 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
17 Hb_009646_030 0.078176238 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007026_030 0.0787091511 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
19 Hb_012098_110 0.0790213847 - - Ribonuclease 3 [Gossypium arboreum]
20 Hb_000029_130 0.0793961708 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000498_010 Hb_000498_010 Hb_000390_180 Hb_000390_180 Hb_000498_010--Hb_000390_180 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000853_230 Hb_000853_230 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000794_050 Hb_000794_050 Hb_000498_010--Hb_000794_050 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_016461_010 Hb_016461_010 Hb_000390_180--Hb_016461_010 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_000879_200--Hb_001926_030 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000618_030--Hb_000879_200 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_000853_230--Hb_001926_030 Hb_001926_030--Hb_004055_150 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_001926_030--Hb_006620_020 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000926_190 Hb_000926_190 Hb_000794_050--Hb_000926_190 Hb_000794_050--Hb_033720_010 Hb_000794_050--Hb_001390_110 Hb_000794_050--Hb_000853_230 Hb_000794_050--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7748 9.71041 13.0328 6.82356 17.4295 21.2426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.694 9.44282 12.7702 10.3558 8.92341

CAGE analysis