Hb_000500_040

Information

Type -
Description -
Location Contig500: 31947-34776
Sequence    

Annotation

kegg
ID rcu:RCOM_1378200
description hypothetical protein
nr
ID XP_002515663.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6BQ20
description Autophagy-related protein 13 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG13 PE=3 SV=2
trembl
ID B9RPJ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1378200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45737: 32077-46608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000175_450 0.0894713816 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
3 Hb_001274_020 0.0912861939 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
4 Hb_000056_100 0.0935690388 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
5 Hb_002026_100 0.0937728952 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
6 Hb_000953_010 0.0938847634 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
7 Hb_000836_360 0.0992805787 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
8 Hb_029584_130 0.0993175173 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
9 Hb_000619_080 0.1003403577 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
10 Hb_000776_110 0.100392102 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
11 Hb_002375_020 0.1020520071 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
12 Hb_000977_070 0.1025002088 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
13 Hb_000754_060 0.1025883007 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
14 Hb_003861_080 0.1029442983 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
15 Hb_001516_100 0.1030909131 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_002813_050 0.1034051547 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
17 Hb_000554_020 0.1042780983 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
18 Hb_001584_160 0.1050366333 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
19 Hb_005839_120 0.1064401101 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_001538_010 0.1066571803 - - -

Gene co-expression network

sample Hb_000500_040 Hb_000500_040 Hb_000175_450 Hb_000175_450 Hb_000500_040--Hb_000175_450 Hb_001274_020 Hb_001274_020 Hb_000500_040--Hb_001274_020 Hb_000056_100 Hb_000056_100 Hb_000500_040--Hb_000056_100 Hb_002026_100 Hb_002026_100 Hb_000500_040--Hb_002026_100 Hb_000953_010 Hb_000953_010 Hb_000500_040--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_000500_040--Hb_000836_360 Hb_001159_100 Hb_001159_100 Hb_000175_450--Hb_001159_100 Hb_000754_060 Hb_000754_060 Hb_000175_450--Hb_000754_060 Hb_001913_010 Hb_001913_010 Hb_000175_450--Hb_001913_010 Hb_029584_130 Hb_029584_130 Hb_000175_450--Hb_029584_130 Hb_000175_450--Hb_000953_010 Hb_015401_020 Hb_015401_020 Hb_001274_020--Hb_015401_020 Hb_000138_040 Hb_000138_040 Hb_001274_020--Hb_000138_040 Hb_001516_100 Hb_001516_100 Hb_001274_020--Hb_001516_100 Hb_001274_020--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001274_020--Hb_000808_180 Hb_010863_080 Hb_010863_080 Hb_000056_100--Hb_010863_080 Hb_000124_020 Hb_000124_020 Hb_000056_100--Hb_000124_020 Hb_002890_280 Hb_002890_280 Hb_000056_100--Hb_002890_280 Hb_000856_340 Hb_000856_340 Hb_000056_100--Hb_000856_340 Hb_003861_080 Hb_003861_080 Hb_000056_100--Hb_003861_080 Hb_012634_010 Hb_012634_010 Hb_002026_100--Hb_012634_010 Hb_000152_820 Hb_000152_820 Hb_002026_100--Hb_000152_820 Hb_000977_070 Hb_000977_070 Hb_002026_100--Hb_000977_070 Hb_010175_020 Hb_010175_020 Hb_002026_100--Hb_010175_020 Hb_001736_040 Hb_001736_040 Hb_002026_100--Hb_001736_040 Hb_000406_220 Hb_000406_220 Hb_002026_100--Hb_000406_220 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_002307_100 Hb_002307_100 Hb_000836_360--Hb_002307_100 Hb_002477_160 Hb_002477_160 Hb_000836_360--Hb_002477_160 Hb_000836_360--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_000836_360--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000836_360--Hb_005324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.5406 45.72 10.0668 12.3858 48.4225 56.0849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4242 50.1576 72.9354 27.0919 8.89713

CAGE analysis