Hb_000500_050

Information

Type -
Description -
Location Contig500: 35456-46393
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_011075658.1
description PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID B8BLB5
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36669 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ac091247_1 5 - partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45738: 38250-38528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_050 0.0 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
2 Hb_003124_110 0.136266177 - - hypothetical protein VITISV_026680 [Vitis vinifera]
3 Hb_002783_150 0.1661018862 - - cyclophilin [Hevea brasiliensis]
4 Hb_000191_080 0.1724063172 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
5 Hb_000032_400 0.1832418167 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
6 Hb_001373_130 0.185274701 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000140_270 0.1875601194 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
8 Hb_183612_070 0.1916525017 - - unnamed protein product [Vitis vinifera]
9 Hb_001621_060 0.1934211997 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
10 Hb_007632_170 0.1966551843 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
11 Hb_009615_180 0.1970169116 - - lipoic acid synthetase, putative [Ricinus communis]
12 Hb_020378_060 0.1986616238 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
13 Hb_001898_180 0.1990392912 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
14 Hb_001294_030 0.2000525984 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
15 Hb_000156_210 0.2028333491 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
16 Hb_019040_030 0.2029625379 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
17 Hb_010577_040 0.2031060501 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
18 Hb_001269_470 0.2052923853 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
19 Hb_000983_070 0.2071894939 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000483_100 0.208237845 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000500_050 Hb_000500_050 Hb_003124_110 Hb_003124_110 Hb_000500_050--Hb_003124_110 Hb_002783_150 Hb_002783_150 Hb_000500_050--Hb_002783_150 Hb_000191_080 Hb_000191_080 Hb_000500_050--Hb_000191_080 Hb_000032_400 Hb_000032_400 Hb_000500_050--Hb_000032_400 Hb_001373_130 Hb_001373_130 Hb_000500_050--Hb_001373_130 Hb_000140_270 Hb_000140_270 Hb_000500_050--Hb_000140_270 Hb_183612_070 Hb_183612_070 Hb_003124_110--Hb_183612_070 Hb_003124_110--Hb_000032_400 Hb_009150_030 Hb_009150_030 Hb_003124_110--Hb_009150_030 Hb_001229_020 Hb_001229_020 Hb_003124_110--Hb_001229_020 Hb_140459_010 Hb_140459_010 Hb_003124_110--Hb_140459_010 Hb_007904_040 Hb_007904_040 Hb_002783_150--Hb_007904_040 Hb_009615_180 Hb_009615_180 Hb_002783_150--Hb_009615_180 Hb_002783_150--Hb_000032_400 Hb_004672_020 Hb_004672_020 Hb_002783_150--Hb_004672_020 Hb_002085_080 Hb_002085_080 Hb_002783_150--Hb_002085_080 Hb_000156_210 Hb_000156_210 Hb_000191_080--Hb_000156_210 Hb_003688_070 Hb_003688_070 Hb_000191_080--Hb_003688_070 Hb_007632_170 Hb_007632_170 Hb_000191_080--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120 Hb_011053_030 Hb_011053_030 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_000594_100 Hb_000594_100 Hb_001373_130--Hb_000594_100 Hb_000983_070 Hb_000983_070 Hb_001373_130--Hb_000983_070 Hb_010128_020 Hb_010128_020 Hb_001373_130--Hb_010128_020 Hb_002529_090 Hb_002529_090 Hb_001373_130--Hb_002529_090 Hb_005489_090 Hb_005489_090 Hb_001373_130--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001373_130--Hb_003935_080 Hb_140627_010 Hb_140627_010 Hb_000140_270--Hb_140627_010 Hb_012022_170 Hb_012022_170 Hb_000140_270--Hb_012022_170 Hb_007741_100 Hb_007741_100 Hb_000140_270--Hb_007741_100 Hb_027298_010 Hb_027298_010 Hb_000140_270--Hb_027298_010 Hb_019762_050 Hb_019762_050 Hb_000140_270--Hb_019762_050 Hb_000457_290 Hb_000457_290 Hb_000140_270--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200484 0.351088 0.251913 0.272568 0.0388455 0.0473758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.182265 0.752909 0.203918 0.192578 1.36352

CAGE analysis