Hb_000500_060

Information

Type -
Description -
Location Contig500: 45936-46256
Sequence    

Annotation

kegg
ID fve:101295768
description serine/threonine-protein kinase TIO-like
nr
ID CDY05942.1
description BnaC08g21190D [Brassica napus]
swissprot
ID -
description -
trembl
ID M0ZIN3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000571 PE=4 SV=1
Gene Ontology
ID GO:0004812
description autophagy-related protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45737: 32077-46608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_060 0.0 - - BnaC08g21190D [Brassica napus]
2 Hb_031042_010 0.1083197977 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
3 Hb_007441_270 0.1087380035 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
4 Hb_000196_050 0.1112834377 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
5 Hb_002701_050 0.1119855665 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
6 Hb_000108_140 0.1147365545 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
7 Hb_000199_070 0.1177348812 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004007_100 0.1207208971 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
9 Hb_000815_260 0.1210098221 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
10 Hb_000347_340 0.1213451345 - - ring finger, putative [Ricinus communis]
11 Hb_009554_010 0.1219859755 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
12 Hb_000561_020 0.1228168616 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
13 Hb_000975_110 0.123929831 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
14 Hb_015175_030 0.1260987468 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
15 Hb_007735_030 0.1297771094 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
16 Hb_000003_730 0.1300288843 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
17 Hb_000184_050 0.1302622656 - - NOI, putative [Ricinus communis]
18 Hb_011161_050 0.1318799185 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
19 Hb_006909_030 0.134238534 - - 40S ribosomal protein S17B [Hevea brasiliensis]
20 Hb_004032_100 0.1350196898 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000500_060 Hb_000500_060 Hb_031042_010 Hb_031042_010 Hb_000500_060--Hb_031042_010 Hb_007441_270 Hb_007441_270 Hb_000500_060--Hb_007441_270 Hb_000196_050 Hb_000196_050 Hb_000500_060--Hb_000196_050 Hb_002701_050 Hb_002701_050 Hb_000500_060--Hb_002701_050 Hb_000108_140 Hb_000108_140 Hb_000500_060--Hb_000108_140 Hb_000199_070 Hb_000199_070 Hb_000500_060--Hb_000199_070 Hb_031042_010--Hb_000196_050 Hb_004007_100 Hb_004007_100 Hb_031042_010--Hb_004007_100 Hb_031042_010--Hb_007441_270 Hb_031042_010--Hb_002701_050 Hb_000561_020 Hb_000561_020 Hb_031042_010--Hb_000561_020 Hb_000003_730 Hb_000003_730 Hb_007441_270--Hb_000003_730 Hb_000684_230 Hb_000684_230 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_003683_040 Hb_003683_040 Hb_000196_050--Hb_003683_040 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000184_050 Hb_000184_050 Hb_000196_050--Hb_000184_050 Hb_009554_010 Hb_009554_010 Hb_000196_050--Hb_009554_010 Hb_000815_260 Hb_000815_260 Hb_000196_050--Hb_000815_260 Hb_002701_050--Hb_004007_100 Hb_002701_050--Hb_000199_070 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_000347_200 Hb_000347_200 Hb_000108_140--Hb_000347_200 Hb_000856_260 Hb_000856_260 Hb_000108_140--Hb_000856_260 Hb_000108_140--Hb_001242_110 Hb_004705_100 Hb_004705_100 Hb_000108_140--Hb_004705_100 Hb_074979_020 Hb_074979_020 Hb_000108_140--Hb_074979_020 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.8478 24.8564 8.91217 75.864 29.3851 122.662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.9826 167.099 75.6644 44.1874 4.80248

CAGE analysis