Hb_000500_080

Information

Type -
Description -
Location Contig500: 62362-64309
Sequence    

Annotation

kegg
ID rcu:RCOM_1502450
description cyclin-dependent protein kinase, putative
nr
ID XP_012090519.1
description PREDICTED: cyclin-U4-1 [Jatropha curcas]
swissprot
ID O80513
description Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
trembl
ID A0A067JI41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26314 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cyclin-dependent protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45743: 63272-63452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_080 0.0 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
2 Hb_001004_120 0.1403954526 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
3 Hb_001080_130 0.1504401416 - - catalase [Hevea brasiliensis]
4 Hb_031931_020 0.1543897575 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
5 Hb_150346_010 0.1587538872 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_000649_270 0.1671825049 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
7 Hb_002902_080 0.1672144513 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
8 Hb_002367_110 0.1705687609 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
9 Hb_002498_050 0.1743242582 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
10 Hb_002192_030 0.1794759824 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010812_110 0.1830366041 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_102591_010 0.1831284035 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
13 Hb_027136_010 0.1898732321 - - hypothetical protein L484_010426 [Morus notabilis]
14 Hb_004306_040 0.1903713245 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
15 Hb_002213_040 0.1912193457 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_006483_030 0.1917883955 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_014497_040 0.1947532701 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
18 Hb_167973_010 0.1969378411 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
19 Hb_000140_450 0.2000063675 - - PREDICTED: calreticulin-3-like [Populus euphratica]
20 Hb_074197_020 0.2002149416 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_080 Hb_000500_080 Hb_001004_120 Hb_001004_120 Hb_000500_080--Hb_001004_120 Hb_001080_130 Hb_001080_130 Hb_000500_080--Hb_001080_130 Hb_031931_020 Hb_031931_020 Hb_000500_080--Hb_031931_020 Hb_150346_010 Hb_150346_010 Hb_000500_080--Hb_150346_010 Hb_000649_270 Hb_000649_270 Hb_000500_080--Hb_000649_270 Hb_002902_080 Hb_002902_080 Hb_000500_080--Hb_002902_080 Hb_001004_120--Hb_000649_270 Hb_012353_040 Hb_012353_040 Hb_001004_120--Hb_012353_040 Hb_003082_040 Hb_003082_040 Hb_001004_120--Hb_003082_040 Hb_001004_120--Hb_150346_010 Hb_014497_040 Hb_014497_040 Hb_001004_120--Hb_014497_040 Hb_000221_120 Hb_000221_120 Hb_001080_130--Hb_000221_120 Hb_001080_130--Hb_150346_010 Hb_000140_450 Hb_000140_450 Hb_001080_130--Hb_000140_450 Hb_000030_240 Hb_000030_240 Hb_001080_130--Hb_000030_240 Hb_006508_030 Hb_006508_030 Hb_001080_130--Hb_006508_030 Hb_031931_020--Hb_000140_450 Hb_005062_110 Hb_005062_110 Hb_031931_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_031931_020--Hb_000320_290 Hb_000058_110 Hb_000058_110 Hb_031931_020--Hb_000058_110 Hb_002367_110 Hb_002367_110 Hb_031931_020--Hb_002367_110 Hb_001159_030 Hb_001159_030 Hb_031931_020--Hb_001159_030 Hb_000260_780 Hb_000260_780 Hb_150346_010--Hb_000260_780 Hb_027136_010 Hb_027136_010 Hb_150346_010--Hb_027136_010 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_178968_050 Hb_178968_050 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_004875_010 Hb_004875_010 Hb_000649_270--Hb_004875_010 Hb_001103_090 Hb_001103_090 Hb_000649_270--Hb_001103_090 Hb_001675_320 Hb_001675_320 Hb_000649_270--Hb_001675_320 Hb_000649_270--Hb_000260_780 Hb_000649_270--Hb_150346_010 Hb_023765_010 Hb_023765_010 Hb_000649_270--Hb_023765_010 Hb_000680_110 Hb_000680_110 Hb_002902_080--Hb_000680_110 Hb_000130_180 Hb_000130_180 Hb_002902_080--Hb_000130_180 Hb_004531_120 Hb_004531_120 Hb_002902_080--Hb_004531_120 Hb_002902_080--Hb_150346_010 Hb_004306_040 Hb_004306_040 Hb_002902_080--Hb_004306_040 Hb_002902_080--Hb_027136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41516 5.42775 2.83555 17.8288 10.6504 5.8033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00854 0.482875 0.703355 7.02774 4.90677

CAGE analysis