Hb_000500_090

Information

Type -
Description -
Location Contig500: 66889-68670
Sequence    

Annotation

kegg
ID egr:104450027
description nucleoside diphosphate kinase 1-like
nr
ID ADR30797.1
description nucleoside diphosphate kinase 2 [Hevea brasiliensis]
swissprot
ID P39207
description Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDK1 PE=1 SV=1
trembl
ID I1SN94
description Nucleoside diphosphate kinase OS=Hevea brasiliensis GN=NDK2 PE=2 SV=1
Gene Ontology
ID GO:0005774
description nucleoside diphosphate kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45744: 66872-68696 , PASA_asmbl_45745: 66880-68150
cDNA
(Sanger)
(ID:Location)		 037_H19.ab1: 66872-68641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_090 0.0 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
2 Hb_001329_220 0.0726892896 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002333_080 0.0867453021 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
4 Hb_007317_180 0.0893824112 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
5 Hb_007254_040 0.0915234046 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
6 Hb_000162_170 0.093299729 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
7 Hb_004970_110 0.0949974177 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
8 Hb_011310_190 0.095095549 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
9 Hb_123475_010 0.0994881095 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
10 Hb_005389_150 0.1003184296 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000169_010 0.1003186679 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
12 Hb_032717_080 0.1019236581 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
13 Hb_003120_030 0.1027599426 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
14 Hb_005539_030 0.1030969391 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
15 Hb_002027_070 0.1038284691 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
16 Hb_003847_080 0.1051568425 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
17 Hb_007617_050 0.1088006791 - - Isoflavone reductase, putative [Ricinus communis]
18 Hb_011828_020 0.1104952769 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
19 Hb_004048_070 0.1113742293 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
20 Hb_001124_210 0.1143203087 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000500_090 Hb_000500_090 Hb_001329_220 Hb_001329_220 Hb_000500_090--Hb_001329_220 Hb_002333_080 Hb_002333_080 Hb_000500_090--Hb_002333_080 Hb_007317_180 Hb_007317_180 Hb_000500_090--Hb_007317_180 Hb_007254_040 Hb_007254_040 Hb_000500_090--Hb_007254_040 Hb_000162_170 Hb_000162_170 Hb_000500_090--Hb_000162_170 Hb_004970_110 Hb_004970_110 Hb_000500_090--Hb_004970_110 Hb_000169_010 Hb_000169_010 Hb_001329_220--Hb_000169_010 Hb_001329_220--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_001329_220--Hb_000032_570 Hb_004048_070 Hb_004048_070 Hb_001329_220--Hb_004048_070 Hb_001329_220--Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_003120_030 Hb_003120_030 Hb_002333_080--Hb_003120_030 Hb_002333_080--Hb_001329_220 Hb_002333_080--Hb_007317_180 Hb_011828_020 Hb_011828_020 Hb_002333_080--Hb_011828_020 Hb_007317_180--Hb_004970_110 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_011310_190 Hb_007254_040--Hb_004970_110 Hb_001135_050 Hb_001135_050 Hb_007254_040--Hb_001135_050 Hb_005215_030 Hb_005215_030 Hb_000162_170--Hb_005215_030 Hb_011689_040 Hb_011689_040 Hb_000162_170--Hb_011689_040 Hb_000162_170--Hb_007254_040 Hb_000162_170--Hb_011310_190 Hb_001221_410 Hb_001221_410 Hb_000162_170--Hb_001221_410 Hb_005539_030 Hb_005539_030 Hb_004970_110--Hb_005539_030 Hb_004970_110--Hb_004048_070 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_004970_110--Hb_000169_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
409.88 123.407 60.8353 252.429 394.411 558.612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
701.242 408.223 273.97 424.539 73.8717

CAGE analysis