Hb_000500_130

Information

Type -
Description -
Location Contig500: 79306-82226
Sequence    

Annotation

kegg
ID rcu:RCOM_1502390
description protein with unknown function (EC:3.1.4.12)
nr
ID AFM30910.1
description small GTPase [Hevea brasiliensis]
swissprot
ID Q05737
description GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
trembl
ID I6QL77
description Small GTPase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45747: 79352-82287
cDNA
(Sanger)
(ID:Location)		 016_A08.ab1: 79352-82059 , 016_M20.ab1: 79352-82042 , 035_J12.ab1: 79352-82024 , 044_P10.ab1: 79352-81973

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_130 0.0 - - small GTPase [Hevea brasiliensis]
2 Hb_159558_030 0.0460405842 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
3 Hb_000200_210 0.061903418 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002400_220 0.0699362067 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_004324_310 0.0723291766 - - conserved hypothetical protein [Ricinus communis]
6 Hb_125000_010 0.072390609 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
7 Hb_022250_040 0.0766333708 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_007919_050 0.0775680468 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
9 Hb_012340_030 0.0785933365 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
10 Hb_006447_010 0.0793137911 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
11 Hb_003540_040 0.079577517 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
12 Hb_001776_110 0.079595862 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
13 Hb_009711_030 0.0802502492 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
14 Hb_006569_020 0.0809970954 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
15 Hb_001195_690 0.0843534639 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
16 Hb_158092_070 0.0862211723 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_003392_040 0.0864317061 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
18 Hb_000316_110 0.0867218446 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
19 Hb_000690_080 0.0875655721 transcription factor TF Family: HB -
20 Hb_118419_020 0.0878375256 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]

Gene co-expression network

sample Hb_000500_130 Hb_000500_130 Hb_159558_030 Hb_159558_030 Hb_000500_130--Hb_159558_030 Hb_000200_210 Hb_000200_210 Hb_000500_130--Hb_000200_210 Hb_002400_220 Hb_002400_220 Hb_000500_130--Hb_002400_220 Hb_004324_310 Hb_004324_310 Hb_000500_130--Hb_004324_310 Hb_125000_010 Hb_125000_010 Hb_000500_130--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_000500_130--Hb_022250_040 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_158092_070 Hb_158092_070 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020 Hb_004297_100 Hb_004297_100 Hb_000200_210--Hb_004297_100 Hb_006447_010 Hb_006447_010 Hb_000200_210--Hb_006447_010 Hb_001019_090 Hb_001019_090 Hb_000200_210--Hb_001019_090 Hb_000200_210--Hb_125000_010 Hb_003874_020 Hb_003874_020 Hb_000200_210--Hb_003874_020 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_001269_150 Hb_001269_150 Hb_002400_220--Hb_001269_150 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_011689_080 Hb_011689_080 Hb_004324_310--Hb_011689_080 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_002105_090 Hb_002105_090 Hb_004324_310--Hb_002105_090 Hb_001377_290 Hb_001377_290 Hb_004324_310--Hb_001377_290 Hb_010436_070 Hb_010436_070 Hb_125000_010--Hb_010436_070 Hb_009711_030 Hb_009711_030 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_125000_010--Hb_022250_040 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
868.07 206.097 213.295 315.253 666.466 822.538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
917.762 768.135 580.95 159.623 104.759

CAGE analysis