Hb_000500_140

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig500: 86896-88778
Sequence    

Annotation

kegg
ID rcu:RCOM_1502380
description hypothetical protein
nr
ID XP_012090770.1
description PREDICTED: protein REVEILLE 4 [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067JSE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26305 PE=4 SV=1
Gene Ontology
ID GO:0003676
description myb-like protein j isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_140 0.0 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
2 Hb_004048_060 0.2367199744 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
3 Hb_001619_080 0.2453899838 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000003_050 0.2511761698 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
5 Hb_000723_160 0.254398265 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
6 Hb_001008_040 0.2613806772 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
7 Hb_000436_010 0.264505388 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
8 Hb_005439_040 0.2651117071 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_005725_090 0.2654006651 - - PREDICTED: phytosulfokines 3 [Cicer arietinum]
10 Hb_001014_120 0.2655409531 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
11 Hb_024468_020 0.2693509122 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_001005_070 0.2726020209 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
13 Hb_006816_450 0.2760397272 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001565_110 0.281698922 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
15 Hb_003609_020 0.2822035593 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
16 Hb_082182_010 0.2829451218 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_000637_120 0.2895574579 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
18 Hb_000243_140 0.2937577697 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
19 Hb_013766_010 0.2950679379 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
20 Hb_011056_020 0.2957575144 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000500_140 Hb_000500_140 Hb_004048_060 Hb_004048_060 Hb_000500_140--Hb_004048_060 Hb_001619_080 Hb_001619_080 Hb_000500_140--Hb_001619_080 Hb_000003_050 Hb_000003_050 Hb_000500_140--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_000500_140--Hb_000723_160 Hb_001008_040 Hb_001008_040 Hb_000500_140--Hb_001008_040 Hb_000436_010 Hb_000436_010 Hb_000500_140--Hb_000436_010 Hb_014497_110 Hb_014497_110 Hb_004048_060--Hb_014497_110 Hb_000392_330 Hb_000392_330 Hb_004048_060--Hb_000392_330 Hb_008516_020 Hb_008516_020 Hb_004048_060--Hb_008516_020 Hb_002983_030 Hb_002983_030 Hb_004048_060--Hb_002983_030 Hb_004048_060--Hb_000723_160 Hb_001005_070 Hb_001005_070 Hb_004048_060--Hb_001005_070 Hb_003052_220 Hb_003052_220 Hb_001619_080--Hb_003052_220 Hb_001619_080--Hb_000003_050 Hb_001619_080--Hb_000723_160 Hb_009510_040 Hb_009510_040 Hb_001619_080--Hb_009510_040 Hb_000243_140 Hb_000243_140 Hb_001619_080--Hb_000243_140 Hb_009486_190 Hb_009486_190 Hb_001619_080--Hb_009486_190 Hb_000003_050--Hb_000723_160 Hb_001969_090 Hb_001969_090 Hb_000003_050--Hb_001969_090 Hb_000317_280 Hb_000317_280 Hb_000003_050--Hb_000317_280 Hb_000406_120 Hb_000406_120 Hb_000003_050--Hb_000406_120 Hb_000003_050--Hb_009510_040 Hb_000503_050 Hb_000503_050 Hb_000003_050--Hb_000503_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_006816_450 Hb_006816_450 Hb_000723_160--Hb_006816_450 Hb_000723_160--Hb_000436_010 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_003609_020 Hb_003609_020 Hb_001008_040--Hb_003609_020 Hb_008225_070 Hb_008225_070 Hb_001008_040--Hb_008225_070 Hb_000045_150 Hb_000045_150 Hb_001008_040--Hb_000045_150 Hb_000733_210 Hb_000733_210 Hb_001008_040--Hb_000733_210 Hb_159921_010 Hb_159921_010 Hb_001008_040--Hb_159921_010 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_007161_010 Hb_007161_010 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_001100_010 Hb_001100_010 Hb_000436_010--Hb_001100_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0687422 0.107227 0 0 0 0.065947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0525072 0.0825912 0.227595 0.0997114 0

CAGE analysis