Hb_000500_220

Information

Type -
Description -
Location Contig500: 153511-162782
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02970g
description POPTRDRAFT_568473; SH3 domain-containing protein 3
nr
ID XP_012091875.1
description PREDICTED: intersectin-1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21661 PE=4 SV=1
Gene Ontology
ID GO:0000023
description sh3 domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45751: 161678-162764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_220 0.0 - - PREDICTED: intersectin-1 [Jatropha curcas]
2 Hb_003680_220 0.0704381204 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
3 Hb_000926_060 0.0797158524 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008725_270 0.0835516643 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
5 Hb_002687_200 0.0918361779 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011671_120 0.0925180499 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
7 Hb_009296_020 0.0998075563 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
8 Hb_011716_010 0.1008582425 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
9 Hb_007483_070 0.103825281 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
10 Hb_070624_010 0.10784165 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
11 Hb_000029_400 0.1080849185 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
12 Hb_001279_190 0.1097758994 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
13 Hb_006438_020 0.1103053725 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
14 Hb_001009_140 0.1103752181 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
15 Hb_001159_060 0.1119055477 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
16 Hb_001504_010 0.1121184124 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
17 Hb_002552_040 0.1130923601 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
18 Hb_000007_090 0.1136478548 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
19 Hb_005946_150 0.1147207235 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
20 Hb_000230_530 0.1151797874 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000500_220 Hb_000500_220 Hb_003680_220 Hb_003680_220 Hb_000500_220--Hb_003680_220 Hb_000926_060 Hb_000926_060 Hb_000500_220--Hb_000926_060 Hb_008725_270 Hb_008725_270 Hb_000500_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_000500_220--Hb_002687_200 Hb_011671_120 Hb_011671_120 Hb_000500_220--Hb_011671_120 Hb_009296_020 Hb_009296_020 Hb_000500_220--Hb_009296_020 Hb_003680_220--Hb_008725_270 Hb_003680_220--Hb_002687_200 Hb_003680_220--Hb_000926_060 Hb_003680_220--Hb_009296_020 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_008725_270--Hb_002687_200 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_001301_280 Hb_001301_280 Hb_011671_120--Hb_001301_280 Hb_011671_120--Hb_002687_200 Hb_002486_080 Hb_002486_080 Hb_011671_120--Hb_002486_080 Hb_001951_060 Hb_001951_060 Hb_011671_120--Hb_001951_060 Hb_000375_300 Hb_000375_300 Hb_011671_120--Hb_000375_300 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95399 7.10609 20.6451 15.3638 4.23722 3.9293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.06322 5.44735 3.3898 13.6972 13.2033

CAGE analysis