Hb_000500_230

Information

Type -
Description -
Location Contig500: 170286-173647
Sequence    

Annotation

kegg
ID rcu:RCOM_0634810
description hypothetical protein
nr
ID XP_002519755.1
description hypothetical protein RCOM_0634810 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S186
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0634810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45752: 170422-173499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_230 0.0 - - hypothetical protein RCOM_0634810 [Ricinus communis]
2 Hb_006970_170 0.0671564429 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_000010_370 0.0727752841 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
4 Hb_000260_480 0.0742775895 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
5 Hb_007894_120 0.0786727776 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_002871_110 0.0875749641 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
7 Hb_017491_010 0.0884256695 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
8 Hb_007483_080 0.1037998852 - - hypothetical protein RCOM_0634810 [Ricinus communis]
9 Hb_000025_590 0.1062349639 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
10 Hb_003849_030 0.1094526981 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
11 Hb_170401_010 0.1097178636 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_000990_040 0.1127439523 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
13 Hb_002849_180 0.1159227125 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
14 Hb_000007_440 0.1159539835 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_006483_090 0.1173518365 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
16 Hb_000270_250 0.1196610557 transcription factor TF Family: MYB hypothetical protein POPTR_0015s07900g [Populus trichocarpa]
17 Hb_000260_410 0.1204710984 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
18 Hb_005999_020 0.1214947805 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
19 Hb_001147_030 0.1239460875 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
20 Hb_044653_050 0.1249144196 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_230 Hb_000500_230 Hb_006970_170 Hb_006970_170 Hb_000500_230--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_000500_230--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_000500_230--Hb_000260_480 Hb_007894_120 Hb_007894_120 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_006970_170--Hb_002871_110 Hb_006970_170--Hb_007894_120 Hb_006970_170--Hb_000010_370 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030 Hb_000025_590 Hb_000025_590 Hb_000010_370--Hb_000025_590 Hb_000010_370--Hb_002871_110 Hb_000010_370--Hb_000260_480 Hb_000010_370--Hb_007894_120 Hb_000260_480--Hb_006970_170 Hb_000260_480--Hb_007894_120 Hb_028928_020 Hb_028928_020 Hb_000260_480--Hb_028928_020 Hb_000260_480--Hb_000025_590 Hb_007894_120--Hb_017491_010 Hb_044653_050 Hb_044653_050 Hb_007894_120--Hb_044653_050 Hb_002871_110--Hb_000025_590 Hb_000694_050 Hb_000694_050 Hb_002871_110--Hb_000694_050 Hb_002871_110--Hb_007894_120 Hb_017491_010--Hb_044653_050 Hb_003071_050 Hb_003071_050 Hb_017491_010--Hb_003071_050 Hb_000260_410 Hb_000260_410 Hb_017491_010--Hb_000260_410 Hb_000818_090 Hb_000818_090 Hb_017491_010--Hb_000818_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14015 16.9377 17.6956 12.6755 0.185232 0.33147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0277755 0.0218529 0 5.60137 17.6723

CAGE analysis