Hb_000500_290

Information

Type -
Description -
Location Contig500: 205159-210386
Sequence    

Annotation

kegg
ID rcu:RCOM_0636080
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_002519772.1
description bromodomain-containing protein, putative [Ricinus communis]
swissprot
ID Q9LS28
description Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2
trembl
ID B9S1A3
description Bromodomain-containing protein, putative OS=Ricinus communis GN=RCOM_0636080 PE=4 SV=1
Gene Ontology
ID GO:0016746
description transcription factor gte12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45757: 205334-210383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_290 0.0 - - bromodomain-containing protein, putative [Ricinus communis]
2 Hb_000282_150 0.0757949495 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
3 Hb_005271_070 0.0889808058 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
4 Hb_001348_140 0.0909853879 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004232_010 0.0926092905 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
6 Hb_009615_110 0.0944369135 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
7 Hb_011537_040 0.0955881121 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
8 Hb_001140_080 0.1069577903 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
9 Hb_005028_010 0.1095004082 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
10 Hb_000320_440 0.1165568644 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
11 Hb_002955_010 0.1165907715 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
12 Hb_164010_020 0.1175867524 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
13 Hb_012807_120 0.1184470895 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_000270_450 0.118489693 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
15 Hb_001009_050 0.1248672564 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
16 Hb_000318_140 0.1249506292 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
17 Hb_000138_010 0.1253793043 - - hypothetical protein RCOM_0504460 [Ricinus communis]
18 Hb_002728_020 0.1263062173 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
19 Hb_000684_180 0.1266201282 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
20 Hb_025048_030 0.1304457653 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000500_290 Hb_000500_290 Hb_000282_150 Hb_000282_150 Hb_000500_290--Hb_000282_150 Hb_005271_070 Hb_005271_070 Hb_000500_290--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_000500_290--Hb_001348_140 Hb_004232_010 Hb_004232_010 Hb_000500_290--Hb_004232_010 Hb_009615_110 Hb_009615_110 Hb_000500_290--Hb_009615_110 Hb_011537_040 Hb_011537_040 Hb_000500_290--Hb_011537_040 Hb_001140_080 Hb_001140_080 Hb_000282_150--Hb_001140_080 Hb_000282_150--Hb_011537_040 Hb_000270_450 Hb_000270_450 Hb_000282_150--Hb_000270_450 Hb_012807_120 Hb_012807_120 Hb_000282_150--Hb_012807_120 Hb_000282_150--Hb_004232_010 Hb_005271_070--Hb_011537_040 Hb_000258_410 Hb_000258_410 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_004374_010 Hb_004374_010 Hb_005271_070--Hb_004374_010 Hb_000640_210 Hb_000640_210 Hb_001348_140--Hb_000640_210 Hb_005028_010 Hb_005028_010 Hb_001348_140--Hb_005028_010 Hb_000264_060 Hb_000264_060 Hb_001348_140--Hb_000264_060 Hb_002728_020 Hb_002728_020 Hb_001348_140--Hb_002728_020 Hb_001348_140--Hb_009615_110 Hb_011609_030 Hb_011609_030 Hb_004232_010--Hb_011609_030 Hb_004232_010--Hb_005741_020 Hb_000714_020 Hb_000714_020 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_000320_440 Hb_000320_440 Hb_009615_110--Hb_000320_440 Hb_002955_010 Hb_002955_010 Hb_009615_110--Hb_002955_010 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_011537_040--Hb_004374_010 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
421.202 121.792 39.8678 25.8646 387.764 449.695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
390.228 82.2526 74.0999 70.1334 22.9701

CAGE analysis