Hb_000500_350

Information

Type -
Description -
Location Contig500: 263127-263510
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03050g
description POPTRDRAFT_568480; hypothetical protein
nr
ID XP_012091865.1
description PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21644 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_350 0.0 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
2 Hb_084230_010 0.1662937221 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
3 Hb_005914_050 0.1699975729 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
4 Hb_000438_130 0.1756669472 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
5 Hb_001386_090 0.1778326099 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
6 Hb_004221_030 0.1800087642 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
7 Hb_012545_040 0.1854378876 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002078_120 0.1873085766 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
9 Hb_000000_180 0.1911960192 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
10 Hb_000005_110 0.1925467726 - - histone H2B1 [Hevea brasiliensis]
11 Hb_001195_050 0.1925533403 - - PREDICTED: adenosine kinase [Jatropha curcas]
12 Hb_012653_030 0.1927390705 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_002498_160 0.1944219219 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
14 Hb_006130_020 0.1968363587 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_000676_020 0.1993479083 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
16 Hb_011004_050 0.1998095203 - - PREDICTED: kinesin-13A [Jatropha curcas]
17 Hb_005690_030 0.2016965901 - - hypothetical protein VITISV_020378 [Vitis vinifera]
18 Hb_027402_020 0.2023847454 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
19 Hb_004517_030 0.2044219717 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000442_040 0.2048680175 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000500_350 Hb_000500_350 Hb_084230_010 Hb_084230_010 Hb_000500_350--Hb_084230_010 Hb_005914_050 Hb_005914_050 Hb_000500_350--Hb_005914_050 Hb_000438_130 Hb_000438_130 Hb_000500_350--Hb_000438_130 Hb_001386_090 Hb_001386_090 Hb_000500_350--Hb_001386_090 Hb_004221_030 Hb_004221_030 Hb_000500_350--Hb_004221_030 Hb_012545_040 Hb_012545_040 Hb_000500_350--Hb_012545_040 Hb_084230_010--Hb_004221_030 Hb_000984_220 Hb_000984_220 Hb_084230_010--Hb_000984_220 Hb_000800_020 Hb_000800_020 Hb_084230_010--Hb_000800_020 Hb_000905_120 Hb_000905_120 Hb_084230_010--Hb_000905_120 Hb_011381_040 Hb_011381_040 Hb_084230_010--Hb_011381_040 Hb_002150_130 Hb_002150_130 Hb_005914_050--Hb_002150_130 Hb_003209_010 Hb_003209_010 Hb_005914_050--Hb_003209_010 Hb_005914_050--Hb_012545_040 Hb_001124_190 Hb_001124_190 Hb_005914_050--Hb_001124_190 Hb_000176_010 Hb_000176_010 Hb_005914_050--Hb_000176_010 Hb_000676_020 Hb_000676_020 Hb_005914_050--Hb_000676_020 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_001711_060 Hb_001711_060 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_003397_030 Hb_003397_030 Hb_000438_130--Hb_003397_030 Hb_001386_090--Hb_003397_030 Hb_001386_090--Hb_001711_060 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_001386_090--Hb_000392_450 Hb_004221_030--Hb_002027_320 Hb_002783_220 Hb_002783_220 Hb_004221_030--Hb_002783_220 Hb_160256_010 Hb_160256_010 Hb_004221_030--Hb_160256_010 Hb_030545_010 Hb_030545_010 Hb_004221_030--Hb_030545_010 Hb_003874_010 Hb_003874_010 Hb_004221_030--Hb_003874_010 Hb_000000_180 Hb_000000_180 Hb_012545_040--Hb_000000_180 Hb_004459_060 Hb_004459_060 Hb_012545_040--Hb_004459_060 Hb_006620_070 Hb_006620_070 Hb_012545_040--Hb_006620_070 Hb_002411_100 Hb_002411_100 Hb_012545_040--Hb_002411_100 Hb_000146_030 Hb_000146_030 Hb_012545_040--Hb_000146_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07798 0.0973076 18.3171 7.06533 0.520851 4.00081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58973 3.39056 1.60656 1.46534 7.04886

CAGE analysis