Hb_000500_360

Information

Type -
Description -
Location Contig500: 267338-273134
Sequence    

Annotation

kegg
ID rcu:RCOM_1253110
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002522297.1
description Xylem serine proteinase 1 precursor, putative [Ricinus communis]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9S8H8
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1253110 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45778: 267454-269216 , PASA_asmbl_45779: 271559-271896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_360 0.0 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
2 Hb_000147_020 0.0585663207 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
3 Hb_001501_020 0.1010938786 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
4 Hb_009102_010 0.1023641449 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000049_170 0.1065818538 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002845_020 0.113863121 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
7 Hb_001285_020 0.114608146 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_007113_020 0.1186847266 - - -
9 Hb_004324_320 0.1221984084 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_007205_020 0.1229539894 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
11 Hb_006827_030 0.1261277921 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_000640_330 0.1281550314 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_750 0.1300935389 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
14 Hb_006970_120 0.1338444078 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001579_060 0.1386453217 - - carbonic anhydrase, putative [Ricinus communis]
16 Hb_002601_140 0.1400947748 - - signal transducer, putative [Ricinus communis]
17 Hb_031201_010 0.1406344521 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
18 Hb_000987_020 0.1408389538 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
19 Hb_004724_180 0.1421058531 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
20 Hb_017098_050 0.1430301138 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]

Gene co-expression network

sample Hb_000500_360 Hb_000500_360 Hb_000147_020 Hb_000147_020 Hb_000500_360--Hb_000147_020 Hb_001501_020 Hb_001501_020 Hb_000500_360--Hb_001501_020 Hb_009102_010 Hb_009102_010 Hb_000500_360--Hb_009102_010 Hb_000049_170 Hb_000049_170 Hb_000500_360--Hb_000049_170 Hb_002845_020 Hb_002845_020 Hb_000500_360--Hb_002845_020 Hb_001285_020 Hb_001285_020 Hb_000500_360--Hb_001285_020 Hb_006970_120 Hb_006970_120 Hb_000147_020--Hb_006970_120 Hb_004324_320 Hb_004324_320 Hb_000147_020--Hb_004324_320 Hb_000260_750 Hb_000260_750 Hb_000147_020--Hb_000260_750 Hb_000640_330 Hb_000640_330 Hb_000147_020--Hb_000640_330 Hb_000380_140 Hb_000380_140 Hb_000147_020--Hb_000380_140 Hb_007113_020 Hb_007113_020 Hb_001501_020--Hb_007113_020 Hb_002030_090 Hb_002030_090 Hb_001501_020--Hb_002030_090 Hb_001266_130 Hb_001266_130 Hb_001501_020--Hb_001266_130 Hb_000261_370 Hb_000261_370 Hb_001501_020--Hb_000261_370 Hb_003224_010 Hb_003224_010 Hb_001501_020--Hb_003224_010 Hb_009102_010--Hb_001285_020 Hb_009102_010--Hb_000260_750 Hb_000880_040 Hb_000880_040 Hb_009102_010--Hb_000880_040 Hb_002025_290 Hb_002025_290 Hb_009102_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_009102_010--Hb_078582_010 Hb_000049_170--Hb_002845_020 Hb_006827_030 Hb_006827_030 Hb_000049_170--Hb_006827_030 Hb_006588_020 Hb_006588_020 Hb_000049_170--Hb_006588_020 Hb_001866_100 Hb_001866_100 Hb_000049_170--Hb_001866_100 Hb_171168_010 Hb_171168_010 Hb_000049_170--Hb_171168_010 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_002845_020--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_002845_020--Hb_007205_020 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020 Hb_001285_020--Hb_002025_290 Hb_003050_010 Hb_003050_010 Hb_001285_020--Hb_003050_010 Hb_005575_010 Hb_005575_010 Hb_001285_020--Hb_005575_010 Hb_003453_060 Hb_003453_060 Hb_001285_020--Hb_003453_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.20837 11.9078 2.81443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0171834 0.0135215 0 8.00435 14.8967

CAGE analysis