Hb_000502_050

Information

Type transcription factor
Description TF Family: HSF
Location Contig502: 67288-73069
Sequence    

Annotation

kegg
ID rcu:RCOM_1278140
description Heat shock factor protein HSF8, putative
nr
ID XP_002527650.1
description Heat shock factor protein HSF8, putative [Ricinus communis]
swissprot
ID Q40152
description Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1
trembl
ID B9SNT1
description Heat shock factor protein HSF8, putative OS=Ricinus communis GN=RCOM_1278140 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat shock factor protein hsf8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45901: 67157-73070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000502_050 0.0 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
2 Hb_003785_040 0.0625769211 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
3 Hb_009411_010 0.0641845387 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
4 Hb_010222_050 0.064778102 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
5 Hb_005993_050 0.0665615835 - - Protein AFR, putative [Ricinus communis]
6 Hb_000574_440 0.0668433955 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
7 Hb_009503_030 0.0671552403 - - protein dimerization, putative [Ricinus communis]
8 Hb_005731_030 0.0682128075 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
9 Hb_003609_030 0.0685797118 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
10 Hb_004221_020 0.0715424607 - - protein binding protein, putative [Ricinus communis]
11 Hb_000768_070 0.0715709922 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
12 Hb_000827_070 0.0721234119 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_000101_240 0.0723319859 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
14 Hb_000084_250 0.0724922559 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_000879_200 0.0730775136 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
16 Hb_004055_150 0.0739132302 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003938_080 0.073999589 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
18 Hb_023386_020 0.074320794 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
19 Hb_031527_020 0.0745799289 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
20 Hb_003018_130 0.0746206028 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]

Gene co-expression network

sample Hb_000502_050 Hb_000502_050 Hb_003785_040 Hb_003785_040 Hb_000502_050--Hb_003785_040 Hb_009411_010 Hb_009411_010 Hb_000502_050--Hb_009411_010 Hb_010222_050 Hb_010222_050 Hb_000502_050--Hb_010222_050 Hb_005993_050 Hb_005993_050 Hb_000502_050--Hb_005993_050 Hb_000574_440 Hb_000574_440 Hb_000502_050--Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000502_050--Hb_009503_030 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_005731_030 Hb_005731_030 Hb_010222_050--Hb_005731_030 Hb_003029_110 Hb_003029_110 Hb_010222_050--Hb_003029_110 Hb_000060_090 Hb_000060_090 Hb_010222_050--Hb_000060_090 Hb_000152_380 Hb_000152_380 Hb_010222_050--Hb_000152_380 Hb_002823_030 Hb_002823_030 Hb_010222_050--Hb_002823_030 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.50792 7.25645 4.57274 3.61356 9.19718 9.77164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35194 5.924 6.56416 4.09254 5.25163

CAGE analysis