Hb_000503_010

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig503: 56216-57663
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G098300g
description hypothetical protein
nr
ID XP_012087841.1
description PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
swissprot
ID Q9SDW0
description Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1
trembl
ID A0A067JY09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25003 PE=4 SV=1
Gene Ontology
ID GO:0005634
description trihelix transcription factor gt-3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45911: 56221-57561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000503_010 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
2 Hb_000302_260 0.1331279519 - - hypothetical protein [Bruguiera gymnorhiza]
3 Hb_014068_050 0.1498489874 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
4 Hb_000426_030 0.1506764132 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
5 Hb_000111_180 0.1600682438 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_000170_240 0.1604278201 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
7 Hb_028487_020 0.1608916278 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
8 Hb_006643_020 0.1623602442 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
9 Hb_002639_100 0.1634173115 - - dehydrin [Hevea brasiliensis]
10 Hb_005146_080 0.1654738501 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
11 Hb_002097_200 0.1661095631 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_171900_020 0.1696370161 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
13 Hb_000318_480 0.1703675782 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
14 Hb_118026_010 0.1708959963 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
15 Hb_000179_240 0.1740371026 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
16 Hb_006538_080 0.1744958006 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
17 Hb_000402_210 0.1750822922 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
18 Hb_002053_130 0.1766752398 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
19 Hb_088753_010 0.1777438197 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
20 Hb_000363_370 0.1779015793 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]

Gene co-expression network

sample Hb_000503_010 Hb_000503_010 Hb_000302_260 Hb_000302_260 Hb_000503_010--Hb_000302_260 Hb_014068_050 Hb_014068_050 Hb_000503_010--Hb_014068_050 Hb_000426_030 Hb_000426_030 Hb_000503_010--Hb_000426_030 Hb_000111_180 Hb_000111_180 Hb_000503_010--Hb_000111_180 Hb_000170_240 Hb_000170_240 Hb_000503_010--Hb_000170_240 Hb_028487_020 Hb_028487_020 Hb_000503_010--Hb_028487_020 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_006538_080 Hb_006538_080 Hb_014068_050--Hb_006538_080 Hb_014068_050--Hb_000111_180 Hb_002301_170 Hb_002301_170 Hb_014068_050--Hb_002301_170 Hb_000512_010 Hb_000512_010 Hb_014068_050--Hb_000512_010 Hb_052764_030 Hb_052764_030 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_002639_100 Hb_002639_100 Hb_000426_030--Hb_002639_100 Hb_062416_010 Hb_062416_010 Hb_000426_030--Hb_062416_010 Hb_001189_110 Hb_001189_110 Hb_000426_030--Hb_001189_110 Hb_000270_350 Hb_000270_350 Hb_000426_030--Hb_000270_350 Hb_000676_040 Hb_000676_040 Hb_000426_030--Hb_000676_040 Hb_000002_240 Hb_000002_240 Hb_000111_180--Hb_000002_240 Hb_000318_480 Hb_000318_480 Hb_000111_180--Hb_000318_480 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110 Hb_000802_090 Hb_000802_090 Hb_000170_240--Hb_000802_090 Hb_002869_050 Hb_002869_050 Hb_000170_240--Hb_002869_050 Hb_001205_200 Hb_001205_200 Hb_000170_240--Hb_001205_200 Hb_000676_260 Hb_000676_260 Hb_000170_240--Hb_000676_260 Hb_000418_010 Hb_000418_010 Hb_000170_240--Hb_000418_010 Hb_011360_050 Hb_011360_050 Hb_000170_240--Hb_011360_050 Hb_005306_190 Hb_005306_190 Hb_028487_020--Hb_005306_190 Hb_002097_200 Hb_002097_200 Hb_028487_020--Hb_002097_200 Hb_000432_040 Hb_000432_040 Hb_028487_020--Hb_000432_040 Hb_000451_070 Hb_000451_070 Hb_028487_020--Hb_000451_070 Hb_001564_080 Hb_001564_080 Hb_028487_020--Hb_001564_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60372 15.0404 5.18532 6.65053 2.56397 5.22053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47099 7.61051 2.82076 6.00753 0.664061

CAGE analysis