Hb_000504_070

Information

Type -
Description -
Location Contig504: 69462-83450
Sequence    

Annotation

kegg
ID rcu:RCOM_1064130
description Pescadillo, putative
nr
ID XP_012072323.1
description PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
swissprot
ID A8JBB2
description Pescadillo homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206018 PE=3 SV=1
trembl
ID A0A067LGE4
description Pescadillo homolog OS=Jatropha curcas GN=JCGZ_10263 PE=3 SV=1
Gene Ontology
ID GO:0005654
description pescadillo homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45928: 69519-83488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_070 0.0 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
2 Hb_028227_070 0.0657736405 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
3 Hb_007416_120 0.068296057 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
4 Hb_002534_120 0.0778439418 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
5 Hb_006452_100 0.0807266108 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
6 Hb_005914_170 0.0825657012 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
7 Hb_000175_540 0.0835774184 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
8 Hb_119530_010 0.0838281733 - - -
9 Hb_001671_100 0.084473265 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
10 Hb_002889_030 0.0856873603 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
11 Hb_010964_040 0.0865706666 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
12 Hb_002481_080 0.0872423197 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
13 Hb_001016_120 0.0882416698 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
14 Hb_003777_320 0.0886504832 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
15 Hb_001500_140 0.0888407039 - - pelota, putative [Ricinus communis]
16 Hb_001314_050 0.0891327663 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
17 Hb_001584_120 0.0895020842 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
18 Hb_004781_010 0.08951864 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
19 Hb_000392_430 0.0903053207 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
20 Hb_000078_120 0.0912398599 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_000504_070 Hb_000504_070 Hb_028227_070 Hb_028227_070 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_002481_080 Hb_002481_080 Hb_028227_070--Hb_002481_080 Hb_001016_120 Hb_001016_120 Hb_028227_070--Hb_001016_120 Hb_010964_040 Hb_010964_040 Hb_028227_070--Hb_010964_040 Hb_001584_120 Hb_001584_120 Hb_028227_070--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_028227_070--Hb_155159_020 Hb_001671_100 Hb_001671_100 Hb_007416_120--Hb_001671_100 Hb_001876_050 Hb_001876_050 Hb_007416_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_007416_120--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_000181_400 Hb_000181_400 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290 Hb_002232_360 Hb_002232_360 Hb_002534_120--Hb_002232_360 Hb_002534_120--Hb_001671_100 Hb_000392_430 Hb_000392_430 Hb_002534_120--Hb_000392_430 Hb_002271_010 Hb_002271_010 Hb_002534_120--Hb_002271_010 Hb_002534_120--Hb_007416_120 Hb_023001_040 Hb_023001_040 Hb_006452_100--Hb_023001_040 Hb_006452_100--Hb_001016_120 Hb_004781_010 Hb_004781_010 Hb_006452_100--Hb_004781_010 Hb_000853_150 Hb_000853_150 Hb_006452_100--Hb_000853_150 Hb_149985_010 Hb_149985_010 Hb_006452_100--Hb_149985_010 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_005914_170--Hb_023001_040 Hb_001215_040 Hb_001215_040 Hb_000175_540--Hb_001215_040 Hb_004453_050 Hb_004453_050 Hb_000175_540--Hb_004453_050 Hb_000175_540--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_000175_540--Hb_109002_020 Hb_000023_280 Hb_000023_280 Hb_000175_540--Hb_000023_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5309 19.9959 14.376 26.4433 11.1873 27.5128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.649 32.0508 23.404 39.928 18.0431

CAGE analysis