Hb_000504_080

Information

Type -
Description -
Location Contig504: 87633-112543
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45940: 109208-109522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_080 0.0 - - -
2 Hb_097433_010 0.2408006048 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
3 Hb_003327_030 0.2485089195 - - Hsc70-interacting protein, putative [Ricinus communis]
4 Hb_012181_010 0.2665975749 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_002814_120 0.2775545155 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
6 Hb_004650_080 0.2865423871 - - -
7 Hb_000513_070 0.2891524434 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
8 Hb_006913_090 0.2901099233 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
9 Hb_003768_040 0.2949722562 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_002311_250 0.2964563122 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
11 Hb_024404_010 0.3047258437 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
12 Hb_001946_360 0.3077888853 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
13 Hb_035947_010 0.3087776843 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
14 Hb_010521_020 0.3206210757 - - -
15 Hb_000099_220 0.3222716766 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_085375_010 0.3247353587 - - protein with unknown function [Ricinus communis]
17 Hb_000590_030 0.3283181642 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000406_040 0.3284823673 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
19 Hb_010521_030 0.3286691856 - - -
20 Hb_000792_070 0.3287109041 - - Ataxin-3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000504_080 Hb_000504_080 Hb_097433_010 Hb_097433_010 Hb_000504_080--Hb_097433_010 Hb_003327_030 Hb_003327_030 Hb_000504_080--Hb_003327_030 Hb_012181_010 Hb_012181_010 Hb_000504_080--Hb_012181_010 Hb_002814_120 Hb_002814_120 Hb_000504_080--Hb_002814_120 Hb_004650_080 Hb_004650_080 Hb_000504_080--Hb_004650_080 Hb_000513_070 Hb_000513_070 Hb_000504_080--Hb_000513_070 Hb_097433_010--Hb_003327_030 Hb_035947_010 Hb_035947_010 Hb_097433_010--Hb_035947_010 Hb_085375_010 Hb_085375_010 Hb_097433_010--Hb_085375_010 Hb_002918_310 Hb_002918_310 Hb_097433_010--Hb_002918_310 Hb_004635_130 Hb_004635_130 Hb_097433_010--Hb_004635_130 Hb_097433_010--Hb_002814_120 Hb_003327_030--Hb_035947_010 Hb_003327_030--Hb_002814_120 Hb_000406_040 Hb_000406_040 Hb_003327_030--Hb_000406_040 Hb_003327_030--Hb_004635_130 Hb_003327_030--Hb_002918_310 Hb_007007_010 Hb_007007_010 Hb_012181_010--Hb_007007_010 Hb_012181_010--Hb_004650_080 Hb_159555_010 Hb_159555_010 Hb_012181_010--Hb_159555_010 Hb_000115_070 Hb_000115_070 Hb_012181_010--Hb_000115_070 Hb_000424_160 Hb_000424_160 Hb_012181_010--Hb_000424_160 Hb_001009_290 Hb_001009_290 Hb_002814_120--Hb_001009_290 Hb_000755_080 Hb_000755_080 Hb_002814_120--Hb_000755_080 Hb_011512_060 Hb_011512_060 Hb_002814_120--Hb_011512_060 Hb_012132_030 Hb_012132_030 Hb_002814_120--Hb_012132_030 Hb_006452_090 Hb_006452_090 Hb_002814_120--Hb_006452_090 Hb_001329_260 Hb_001329_260 Hb_004650_080--Hb_001329_260 Hb_004097_020 Hb_004097_020 Hb_004650_080--Hb_004097_020 Hb_003768_040 Hb_003768_040 Hb_004650_080--Hb_003768_040 Hb_001946_360 Hb_001946_360 Hb_004650_080--Hb_001946_360 Hb_168978_040 Hb_168978_040 Hb_004650_080--Hb_168978_040 Hb_004650_080--Hb_097433_010 Hb_000513_070--Hb_006452_090 Hb_001247_200 Hb_001247_200 Hb_000513_070--Hb_001247_200 Hb_048476_170 Hb_048476_170 Hb_000513_070--Hb_048476_170 Hb_000513_070--Hb_002814_120 Hb_000384_030 Hb_000384_030 Hb_000513_070--Hb_000384_030 Hb_006816_170 Hb_006816_170 Hb_000513_070--Hb_006816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0536481 0.0286842 0.0190714 0 0.241741 0.00782873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0147959 0.0563437 0.0470242 0.0314081

CAGE analysis