Hb_000504_100

Information

Type -
Description -
Location Contig504: 118194-118520
Sequence    

Annotation

kegg
ID rcu:RCOM_1064360
description hypothetical protein
nr
ID XP_002521465.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S646
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1064360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001856_130 0.1341208288 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
3 Hb_000714_070 0.1369659644 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
4 Hb_017549_010 0.1402644876 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
5 Hb_116091_010 0.1424886675 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
6 Hb_000120_600 0.1430537882 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
7 Hb_030827_080 0.1461100206 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
8 Hb_008352_020 0.1515424495 - - hypothetical protein [Cecembia lonarensis]
9 Hb_029576_070 0.1532936212 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
10 Hb_153180_010 0.155828595 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
11 Hb_002739_160 0.1576444897 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_010642_010 0.1582542523 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
13 Hb_002597_030 0.1584157677 - - -
14 Hb_011355_020 0.1623961772 - - extensin, proline-rich protein, putative [Ricinus communis]
15 Hb_001675_290 0.1639360482 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
16 Hb_002640_030 0.1654869254 - - hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
17 Hb_000186_320 0.1669192467 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_001675_260 0.1686585508 - - nitrate transporter, putative [Ricinus communis]
19 Hb_000983_110 0.1687106518 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
20 Hb_002804_070 0.1702057251 - - hypothetical protein JCGZ_05701 [Jatropha curcas]

Gene co-expression network

sample Hb_000504_100 Hb_000504_100 Hb_001856_130 Hb_001856_130 Hb_000504_100--Hb_001856_130 Hb_000714_070 Hb_000714_070 Hb_000504_100--Hb_000714_070 Hb_017549_010 Hb_017549_010 Hb_000504_100--Hb_017549_010 Hb_116091_010 Hb_116091_010 Hb_000504_100--Hb_116091_010 Hb_000120_600 Hb_000120_600 Hb_000504_100--Hb_000120_600 Hb_030827_080 Hb_030827_080 Hb_000504_100--Hb_030827_080 Hb_001856_130--Hb_000120_600 Hb_153180_010 Hb_153180_010 Hb_001856_130--Hb_153180_010 Hb_001417_090 Hb_001417_090 Hb_001856_130--Hb_001417_090 Hb_120040_010 Hb_120040_010 Hb_001856_130--Hb_120040_010 Hb_001953_010 Hb_001953_010 Hb_001856_130--Hb_001953_010 Hb_000000_320 Hb_000000_320 Hb_001856_130--Hb_000000_320 Hb_015884_010 Hb_015884_010 Hb_000714_070--Hb_015884_010 Hb_010642_010 Hb_010642_010 Hb_000714_070--Hb_010642_010 Hb_000714_070--Hb_030827_080 Hb_000714_070--Hb_153180_010 Hb_000714_070--Hb_001856_130 Hb_000714_070--Hb_000120_600 Hb_001115_100 Hb_001115_100 Hb_017549_010--Hb_001115_100 Hb_017549_010--Hb_000120_600 Hb_002597_030 Hb_002597_030 Hb_017549_010--Hb_002597_030 Hb_004374_170 Hb_004374_170 Hb_017549_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_017549_010--Hb_002804_070 Hb_029576_070 Hb_029576_070 Hb_017549_010--Hb_029576_070 Hb_002874_160 Hb_002874_160 Hb_116091_010--Hb_002874_160 Hb_116091_010--Hb_000714_070 Hb_116091_010--Hb_000120_600 Hb_023768_010 Hb_023768_010 Hb_116091_010--Hb_023768_010 Hb_188281_010 Hb_188281_010 Hb_116091_010--Hb_188281_010 Hb_000120_600--Hb_002804_070 Hb_000120_600--Hb_001953_010 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_002739_160 Hb_002739_160 Hb_030827_080--Hb_002739_160 Hb_030827_080--Hb_010642_010 Hb_008352_020 Hb_008352_020 Hb_030827_080--Hb_008352_020 Hb_030827_080--Hb_153180_010 Hb_001198_180 Hb_001198_180 Hb_030827_080--Hb_001198_180 Hb_001663_090 Hb_001663_090 Hb_030827_080--Hb_001663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.35677 1.52914 5.53622 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.304134 0 0 0.326046 0.386846

CAGE analysis