Hb_000504_140

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig504: 141940-152140
Sequence    

Annotation

kegg
ID rcu:RCOM_1064490
description abc transporter, putative (EC:3.6.3.44)
nr
ID XP_012072090.1
description PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8RY46
description ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=2 SV=1
trembl
ID B9S649
description Abc transporter, putative OS=Ricinus communis GN=RCOM_1064490 PE=3 SV=1
Gene Ontology
ID GO:0000166
description abc transporter b family member chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45943: 144782-145092 , PASA_asmbl_45945: 149004-150040 , PASA_asmbl_45946: 151080-151448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_140 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
2 Hb_005539_280 0.0550371258 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
3 Hb_001758_100 0.0565660044 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
4 Hb_005779_060 0.0575405367 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_001633_050 0.064302194 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
6 Hb_000317_240 0.0643718754 - - PREDICTED: protein DYAD [Jatropha curcas]
7 Hb_005618_170 0.0660652424 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
8 Hb_002499_040 0.0661393667 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
9 Hb_000757_060 0.0683729787 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
10 Hb_010422_060 0.0687716683 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_000016_250 0.0689278968 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
12 Hb_058999_020 0.069564745 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
13 Hb_000777_040 0.0704971692 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_000976_430 0.0711625118 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
15 Hb_008900_010 0.0714300603 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
16 Hb_001726_020 0.071881216 - - PREDICTED: endophilin-A1 [Jatropha curcas]
17 Hb_000030_300 0.0724289698 - - Thioredoxin, putative [Ricinus communis]
18 Hb_032202_190 0.0730116169 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
19 Hb_002830_030 0.0739261757 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
20 Hb_000768_090 0.0751221727 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000504_140 Hb_000504_140 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_001758_100 Hb_001758_100 Hb_000504_140--Hb_001758_100 Hb_005779_060 Hb_005779_060 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000317_240 Hb_000317_240 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_001726_020 Hb_001726_020 Hb_005539_280--Hb_001726_020 Hb_000250_060 Hb_000250_060 Hb_005539_280--Hb_000250_060 Hb_058999_020 Hb_058999_020 Hb_005539_280--Hb_058999_020 Hb_005539_280--Hb_001633_050 Hb_005539_280--Hb_005779_060 Hb_000120_470 Hb_000120_470 Hb_001758_100--Hb_000120_470 Hb_008900_010 Hb_008900_010 Hb_001758_100--Hb_008900_010 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_000876_070 Hb_000876_070 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_004116_190 Hb_004116_190 Hb_001633_050--Hb_004116_190 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_002995_020 Hb_002995_020 Hb_001633_050--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030 Hb_002530_030 Hb_002530_030 Hb_000317_240--Hb_002530_030 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000317_240--Hb_000465_460 Hb_000317_240--Hb_058999_020 Hb_005305_080 Hb_005305_080 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62117 1.8023 2.17811 1.53172 2.96334 2.68153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.27852 3.92873 3.79896 2.84349 1.47713

CAGE analysis