Hb_000504_170

Information

Type -
Description -
Location Contig504: 210601-215708
Sequence    

Annotation

kegg
ID fve:101296559
description uncharacterized protein LOC101296559
nr
ID KJB33845.1
description hypothetical protein B456_006G033900 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SRF5
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G033900 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nuclear pore complex protein gp210

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45952: 198857-212107 , PASA_asmbl_45953: 212391-215551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_170 0.0 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
2 Hb_001922_130 0.118868824 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
3 Hb_000186_260 0.1221030032 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
4 Hb_009178_020 0.1227589053 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
5 Hb_007083_010 0.1230880372 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
6 Hb_121729_020 0.1267804911 - - DNA binding protein, putative [Ricinus communis]
7 Hb_007416_200 0.1274102987 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
8 Hb_001474_030 0.1281277127 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
9 Hb_000116_570 0.1287542539 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
10 Hb_000093_130 0.1296860828 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
11 Hb_014720_170 0.1309159285 - - glutaredoxin-1, grx1, putative [Ricinus communis]
12 Hb_009838_130 0.1320642175 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
13 Hb_000684_300 0.1339681162 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
14 Hb_010883_080 0.1345568475 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
15 Hb_007951_100 0.1347007793 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_012184_050 0.1360571043 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
17 Hb_002805_170 0.136237916 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
18 Hb_107847_010 0.1375822851 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
19 Hb_000107_170 0.1377809264 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
20 Hb_156144_030 0.1388774454 - - hypothetical protein RCOM_0187400 [Ricinus communis]

Gene co-expression network

sample Hb_000504_170 Hb_000504_170 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_007083_010 Hb_007083_010 Hb_000504_170--Hb_007083_010 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_001473_080 Hb_001473_080 Hb_001922_130--Hb_001473_080 Hb_000120_570 Hb_000120_570 Hb_001922_130--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001922_130--Hb_010883_080 Hb_004374_150 Hb_004374_150 Hb_001922_130--Hb_004374_150 Hb_000116_570 Hb_000116_570 Hb_001922_130--Hb_000116_570 Hb_001922_130--Hb_000186_260 Hb_000504_160 Hb_000504_160 Hb_000186_260--Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_000186_260--Hb_001473_080 Hb_001396_290 Hb_001396_290 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040 Hb_000953_030 Hb_000953_030 Hb_009178_020--Hb_000953_030 Hb_001474_030 Hb_001474_030 Hb_009178_020--Hb_001474_030 Hb_009178_020--Hb_001473_080 Hb_000685_080 Hb_000685_080 Hb_009178_020--Hb_000685_080 Hb_009178_020--Hb_000504_160 Hb_009178_020--Hb_000186_260 Hb_014720_170 Hb_014720_170 Hb_007083_010--Hb_014720_170 Hb_027472_210 Hb_027472_210 Hb_007083_010--Hb_027472_210 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_002026_140 Hb_002026_140 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_012184_050 Hb_012184_050 Hb_121729_020--Hb_012184_050 Hb_003064_030 Hb_003064_030 Hb_121729_020--Hb_003064_030 Hb_002805_170 Hb_002805_170 Hb_121729_020--Hb_002805_170 Hb_005695_060 Hb_005695_060 Hb_121729_020--Hb_005695_060 Hb_008246_030 Hb_008246_030 Hb_121729_020--Hb_008246_030 Hb_003813_200 Hb_003813_200 Hb_007416_200--Hb_003813_200 Hb_000093_130 Hb_000093_130 Hb_007416_200--Hb_000093_130 Hb_000684_300 Hb_000684_300 Hb_007416_200--Hb_000684_300 Hb_005333_020 Hb_005333_020 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9758 24.065 16.9018 4.31171 32.2374 22.9198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.068 12.9902 2.636 5.29278 2.34349

CAGE analysis