Hb_000504_200

Information

Type -
Description -
Location Contig504: 239755-246168
Sequence    

Annotation

kegg
ID rcu:RCOM_1064630
description hypothetical protein
nr
ID KDP46413.1
description hypothetical protein JCGZ_10253 [Jatropha curcas]
swissprot
ID A5DK49
description Altered inheritance of mitochondria protein 32 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=AIM32 PE=3 SV=2
trembl
ID A0A067LGD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10253 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45957: 239967-246020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_200 0.0 - - hypothetical protein JCGZ_10253 [Jatropha curcas]
2 Hb_001604_010 0.1024357761 - - 14-3-3 protein, putative [Ricinus communis]
3 Hb_000573_020 0.1097050738 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
4 Hb_002900_190 0.1120265195 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
5 Hb_000483_360 0.1168659419 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
6 Hb_004048_070 0.121186831 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
7 Hb_005215_030 0.1220577623 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
8 Hb_010931_120 0.1246749326 - - myosin heavy chain-related family protein [Populus trichocarpa]
9 Hb_000009_170 0.1255822917 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
10 Hb_001771_140 0.1274743843 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
11 Hb_005539_030 0.1282657753 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_015746_010 0.1291980909 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
13 Hb_000445_420 0.1313181609 - - protein transporter, putative [Ricinus communis]
14 Hb_176681_010 0.1327579865 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
15 Hb_001500_040 0.132849763 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000638_080 0.1333764283 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
17 Hb_010710_030 0.1337186262 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
18 Hb_000051_110 0.134671613 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000010_470 0.1350015242 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
20 Hb_001248_130 0.1354244116 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000504_200 Hb_000504_200 Hb_001604_010 Hb_001604_010 Hb_000504_200--Hb_001604_010 Hb_000573_020 Hb_000573_020 Hb_000504_200--Hb_000573_020 Hb_002900_190 Hb_002900_190 Hb_000504_200--Hb_002900_190 Hb_000483_360 Hb_000483_360 Hb_000504_200--Hb_000483_360 Hb_004048_070 Hb_004048_070 Hb_000504_200--Hb_004048_070 Hb_005215_030 Hb_005215_030 Hb_000504_200--Hb_005215_030 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_015746_010 Hb_015746_010 Hb_001604_010--Hb_015746_010 Hb_028872_140 Hb_028872_140 Hb_001604_010--Hb_028872_140 Hb_001248_130 Hb_001248_130 Hb_001604_010--Hb_001248_130 Hb_000120_950 Hb_000120_950 Hb_001604_010--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_001604_010--Hb_001584_330 Hb_000009_170 Hb_000009_170 Hb_000573_020--Hb_000009_170 Hb_000436_070 Hb_000436_070 Hb_000573_020--Hb_000436_070 Hb_000620_010 Hb_000620_010 Hb_000573_020--Hb_000620_010 Hb_000573_020--Hb_001604_010 Hb_001001_060 Hb_001001_060 Hb_000573_020--Hb_001001_060 Hb_001771_140 Hb_001771_140 Hb_000573_020--Hb_001771_140 Hb_002900_190--Hb_001771_140 Hb_001386_120 Hb_001386_120 Hb_002900_190--Hb_001386_120 Hb_002900_190--Hb_015746_010 Hb_002900_190--Hb_001604_010 Hb_010931_120 Hb_010931_120 Hb_002900_190--Hb_010931_120 Hb_012022_030 Hb_012022_030 Hb_002900_190--Hb_012022_030 Hb_003728_030 Hb_003728_030 Hb_000483_360--Hb_003728_030 Hb_005539_030 Hb_005539_030 Hb_000483_360--Hb_005539_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_000556_020 Hb_000556_020 Hb_000483_360--Hb_000556_020 Hb_000483_360--Hb_005215_030 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004970_110 Hb_004970_110 Hb_004048_070--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_004048_070--Hb_007254_040 Hb_001135_050 Hb_001135_050 Hb_004048_070--Hb_001135_050 Hb_004048_070--Hb_005539_030 Hb_011689_040 Hb_011689_040 Hb_005215_030--Hb_011689_040 Hb_000395_080 Hb_000395_080 Hb_005215_030--Hb_000395_080 Hb_005215_030--Hb_005539_030 Hb_005215_030--Hb_000556_020 Hb_005215_030--Hb_003728_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.334 57.4591 45.141 52.3619 167.531 94.0773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
231.343 73.9049 168.881 137.477 31.976

CAGE analysis