Hb_000505_020

Information

Type -
Description -
Location Contig505: 15943-23659
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00390g
description hypothetical protein
nr
ID XP_012081141.1
description PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
swissprot
ID Q52T38
description Protein S-acyltransferase 24 OS=Arabidopsis thaliana GN=PAT24 PE=2 SV=1
trembl
ID A0A067KDB6
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_16992 PE=3 SV=1
Gene Ontology
ID GO:0005515
description protein s-acyltransferase 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45992: 15862-23628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_020 0.0 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
2 Hb_000109_100 0.0433445772 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
3 Hb_010053_030 0.0599339771 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
4 Hb_104061_020 0.0648286747 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
5 Hb_003498_120 0.065025457 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
6 Hb_002078_100 0.0676862272 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
7 Hb_001235_140 0.0677124107 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
8 Hb_001454_370 0.070242751 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
9 Hb_002329_040 0.0711140062 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
10 Hb_001623_480 0.0728188715 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
11 Hb_000740_100 0.0740459001 - - calpain, putative [Ricinus communis]
12 Hb_000300_440 0.075117908 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
13 Hb_010661_050 0.0758305458 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
14 Hb_000856_140 0.0761656288 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
15 Hb_000160_290 0.0762209464 - - unnamed protein product [Vitis vinifera]
16 Hb_001454_320 0.0792330441 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
17 Hb_011689_060 0.0797953938 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
18 Hb_001377_160 0.0802898661 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
19 Hb_011173_030 0.0810139526 - - pumilio, putative [Ricinus communis]
20 Hb_002107_070 0.0820813112 - - hypothetical protein RCOM_1598630 [Ricinus communis]

Gene co-expression network

sample Hb_000505_020 Hb_000505_020 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_001235_140 Hb_001235_140 Hb_000505_020--Hb_001235_140 Hb_000160_290 Hb_000160_290 Hb_000109_100--Hb_000160_290 Hb_000109_100--Hb_002078_100 Hb_000300_440 Hb_000300_440 Hb_000109_100--Hb_000300_440 Hb_001623_480 Hb_001623_480 Hb_000109_100--Hb_001623_480 Hb_003299_070 Hb_003299_070 Hb_000109_100--Hb_003299_070 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_010053_030--Hb_104061_020 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_104061_020--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_000470_070 Hb_000470_070 Hb_002078_100--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_002078_100--Hb_009296_010 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_002078_100--Hb_019654_040 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2606 25.914 14.8479 16.1346 30.725 28.8335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.395 7.46214 11.9773 29.1774 15.3767

CAGE analysis