Hb_000505_070

Information

Type -
Description -
Location Contig505: 57449-60380
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00410g
description hypothetical protein
nr
ID XP_012081145.1
description PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9FZP1
description Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2
trembl
ID A0A067KEH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16996 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_070 0.0 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
2 Hb_000424_080 0.2612952405 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
3 Hb_004724_470 0.2645304638 - - Nitrilase, putative [Ricinus communis]
4 Hb_054541_010 0.2690038753 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_023051_010 0.2727841654 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
6 Hb_001357_330 0.2746456699 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
7 Hb_010534_050 0.2771670775 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
8 Hb_007765_070 0.2805722377 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
9 Hb_010942_020 0.2808238548 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000050_140 0.2848511954 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
11 Hb_011781_040 0.2895684961 - - -
12 Hb_035436_010 0.2926206432 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
13 Hb_004052_160 0.301406947 - - Chain A, Rna Binding Protein
14 Hb_000422_130 0.3016534655 - - hypothetical protein JCGZ_15217 [Jatropha curcas]
15 Hb_000270_870 0.3028816011 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
16 Hb_002804_020 0.3072534143 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
17 Hb_000138_050 0.3084263081 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
18 Hb_000792_080 0.3096703314 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
19 Hb_001050_060 0.3103125915 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
20 Hb_001776_030 0.3107383582 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000505_070 Hb_000505_070 Hb_000424_080 Hb_000424_080 Hb_000505_070--Hb_000424_080 Hb_004724_470 Hb_004724_470 Hb_000505_070--Hb_004724_470 Hb_054541_010 Hb_054541_010 Hb_000505_070--Hb_054541_010 Hb_023051_010 Hb_023051_010 Hb_000505_070--Hb_023051_010 Hb_001357_330 Hb_001357_330 Hb_000505_070--Hb_001357_330 Hb_010534_050 Hb_010534_050 Hb_000505_070--Hb_010534_050 Hb_001001_050 Hb_001001_050 Hb_000424_080--Hb_001001_050 Hb_145655_010 Hb_145655_010 Hb_000424_080--Hb_145655_010 Hb_022174_010 Hb_022174_010 Hb_000424_080--Hb_022174_010 Hb_002235_270 Hb_002235_270 Hb_000424_080--Hb_002235_270 Hb_000640_140 Hb_000640_140 Hb_000424_080--Hb_000640_140 Hb_000979_010 Hb_000979_010 Hb_000424_080--Hb_000979_010 Hb_007765_070 Hb_007765_070 Hb_004724_470--Hb_007765_070 Hb_000203_230 Hb_000203_230 Hb_004724_470--Hb_000203_230 Hb_083641_010 Hb_083641_010 Hb_004724_470--Hb_083641_010 Hb_004445_040 Hb_004445_040 Hb_004724_470--Hb_004445_040 Hb_000094_290 Hb_000094_290 Hb_004724_470--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_004724_470--Hb_010003_010 Hb_035436_010 Hb_035436_010 Hb_054541_010--Hb_035436_010 Hb_177152_010 Hb_177152_010 Hb_054541_010--Hb_177152_010 Hb_013358_100 Hb_013358_100 Hb_054541_010--Hb_013358_100 Hb_000422_130 Hb_000422_130 Hb_054541_010--Hb_000422_130 Hb_004525_080 Hb_004525_080 Hb_054541_010--Hb_004525_080 Hb_068569_010 Hb_068569_010 Hb_054541_010--Hb_068569_010 Hb_000792_080 Hb_000792_080 Hb_023051_010--Hb_000792_080 Hb_000377_140 Hb_000377_140 Hb_023051_010--Hb_000377_140 Hb_048103_010 Hb_048103_010 Hb_023051_010--Hb_048103_010 Hb_004052_160 Hb_004052_160 Hb_023051_010--Hb_004052_160 Hb_000982_150 Hb_000982_150 Hb_023051_010--Hb_000982_150 Hb_011781_040 Hb_011781_040 Hb_023051_010--Hb_011781_040 Hb_000270_870 Hb_000270_870 Hb_001357_330--Hb_000270_870 Hb_074449_010 Hb_074449_010 Hb_001357_330--Hb_074449_010 Hb_024836_010 Hb_024836_010 Hb_001357_330--Hb_024836_010 Hb_000138_050 Hb_000138_050 Hb_001357_330--Hb_000138_050 Hb_010942_020 Hb_010942_020 Hb_001357_330--Hb_010942_020 Hb_161478_010 Hb_161478_010 Hb_001357_330--Hb_161478_010 Hb_001050_060 Hb_001050_060 Hb_010534_050--Hb_001050_060 Hb_001711_050 Hb_001711_050 Hb_010534_050--Hb_001711_050 Hb_000928_050 Hb_000928_050 Hb_010534_050--Hb_000928_050 Hb_071869_010 Hb_071869_010 Hb_010534_050--Hb_071869_010 Hb_141296_010 Hb_141296_010 Hb_010534_050--Hb_141296_010 Hb_000206_190 Hb_000206_190 Hb_010534_050--Hb_000206_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14211 0.180933 3.72375 4.43811 0.0779904 4.84913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0232652 0.0549166 0.242809 0.633767 1.31425

CAGE analysis