Hb_000505_130

Information

Type -
Description -
Location Contig505: 178780-188810
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00570g
description hypothetical protein
nr
ID XP_012081157.1
description PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9P889
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00570g PE=2 SV=1
Gene Ontology
ID GO:0005515
description ring u-box superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46013: 178923-188677 , PASA_asmbl_46014: 179918-180261 , PASA_asmbl_46015: 178902-182629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_130 0.0 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
2 Hb_000310_020 0.0450225731 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
3 Hb_001931_010 0.0571900701 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
4 Hb_000221_190 0.0605136825 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
5 Hb_044653_040 0.0609042572 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
6 Hb_003124_150 0.0699567556 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
7 Hb_006326_040 0.0711081071 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003582_060 0.0735792061 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_000566_120 0.076100572 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
10 Hb_000161_130 0.0765434274 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
11 Hb_006615_240 0.0767161772 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
12 Hb_000928_070 0.0781416883 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_000580_020 0.0783898006 - - unnamed protein product [Vitis vinifera]
14 Hb_017895_040 0.0792842047 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
15 Hb_003878_090 0.0793912048 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
16 Hb_000599_260 0.0795188063 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
17 Hb_000733_180 0.0803279112 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
18 Hb_000003_230 0.0835891592 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
19 Hb_005843_140 0.0843870655 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
20 Hb_000045_310 0.0844554218 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000505_130 Hb_000505_130 Hb_000310_020 Hb_000310_020 Hb_000505_130--Hb_000310_020 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000221_190 Hb_000221_190 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_003124_150 Hb_003124_150 Hb_000505_130--Hb_003124_150 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040 Hb_000310_020--Hb_000221_190 Hb_000161_130 Hb_000161_130 Hb_000310_020--Hb_000161_130 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_004324_090 Hb_004324_090 Hb_000310_020--Hb_004324_090 Hb_000310_020--Hb_003124_150 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_006326_040--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.12141 6.88746 11.4613 11.1315 4.28779 6.85021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0068 17.2834 9.60143 6.83255 9.05538

CAGE analysis