Hb_000505_140

Information

Type -
Description -
Location Contig505: 224189-226298
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00600g
description ARP2/3 complex 21 kDa subunit family protein
nr
ID XP_011017870.1
description PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
swissprot
ID Q1ECJ7
description Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana GN=ARPC3 PE=1 SV=1
trembl
ID A0A067K2A9
description Actin-related protein 2/3 complex subunit 3 OS=Jatropha curcas GN=JCGZ_17009 PE=3 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46021: 224210-226345 , PASA_asmbl_46022: 224208-226400
cDNA
(Sanger)
(ID:Location)		 023_G16.ab1: 224302-226345

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_140 0.0 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
2 Hb_012022_120 0.0600090583 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
3 Hb_000000_170 0.0622339964 - - defender against cell death, putative [Ricinus communis]
4 Hb_032202_090 0.0692169111 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
5 Hb_004502_020 0.0724670526 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_000086_550 0.0773946472 - - Os02g0814700 [Oryza sativa Japonica Group]
7 Hb_000926_300 0.0830493633 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
8 Hb_128048_010 0.0869414325 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
9 Hb_002311_320 0.0882626358 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
10 Hb_000484_020 0.0889257729 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
11 Hb_000317_340 0.089541118 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000995_040 0.0899285201 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002207_110 0.0902917846 - - -
14 Hb_009554_010 0.0915322934 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
15 Hb_005357_130 0.0927711629 - - hypothetical protein L484_012905 [Morus notabilis]
16 Hb_009793_010 0.0942656511 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
17 Hb_000007_100 0.0957714928 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_001016_030 0.095969405 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
19 Hb_002716_090 0.0977948556 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
20 Hb_093666_020 0.0987631443 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000505_140 Hb_000505_140 Hb_012022_120 Hb_012022_120 Hb_000505_140--Hb_012022_120 Hb_000000_170 Hb_000000_170 Hb_000505_140--Hb_000000_170 Hb_032202_090 Hb_032202_090 Hb_000505_140--Hb_032202_090 Hb_004502_020 Hb_004502_020 Hb_000505_140--Hb_004502_020 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000926_300 Hb_000926_300 Hb_000505_140--Hb_000926_300 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_012022_120--Hb_032202_090 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_128048_010 Hb_128048_010 Hb_000000_170--Hb_128048_010 Hb_001184_090 Hb_001184_090 Hb_000000_170--Hb_001184_090 Hb_000000_170--Hb_000926_300 Hb_002900_160 Hb_002900_160 Hb_000000_170--Hb_002900_160 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_032202_090--Hb_000926_300 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_000003_730 Hb_000003_730 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_004502_020--Hb_032202_090 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_000926_300--Hb_128048_010 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7991 5.00367 14.2995 24.4175 27.8513 40.4689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.8056 67.7436 20.6813 16.7561 9.67777

CAGE analysis